Hi, On the subject of "circular variance circle plots for dihedral angles". If we are talking about the same thing, I have implemented some of this in python if anyone wants it.
That is, I had to calculate the circular means and std dev for lists of torsion angles, and used the method described in Allen and Johnson Acta Cryst. (1991). B47, 62-67. If someone wants the code, do ask. gilleain On 9/25/07, Jurgen F. Doreleijers <[email protected]> wrote: > Thanks Justin, > > The fink install took a long time but worked like a charm. > I haven't tried Logan's method. > > In due time, we might post some python scripts to do similar stuff in > PyMol. I have to migrate away from molmol at some point;-) > > Cheers, > Jurgen > BMRB, Madison, WI > > On 9/25/07, Justin Schmitz <[email protected]> wrote: > > Jurgen F. Doreleijers schrieb: > > > Sorry if it's a bit off topic but I need some Molmol features Pymol > > > simply hasn't come around to implement yet. Anybody know how to > > > compile Molmol on the Mac OS X? > > > > > There is a packages in the fink database. So you could easily install > > and compile it via fink. > > > To satisfy your curiosity, the features list I am interested in: > > > - regions of matching residues in the way Michael Nilges proposed. > > > - doing circular variance circle plots for dihedral angles. > > > - rmsd tables for NMR ensembles, etc. > > > > > > It's no big deal I can still do these things displayed thru X11 > > > remotely running. Just interested. > > > > > > Cheers, > > > > > > > > > ------------------------------------------------------------------------- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2005. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > PyMOL-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > -- > Jurgen F. Doreleijers > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > PyMOL-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/pymol-users >
