Hi Frieda, That's odd. It seems to work okay for mulitchain proteins (I'll add some extra bits to handle chains).
The "--" in the output is weird. It suggests that either the start numbers end in a dash or the end number start with a dash. It's difficult to diagnose the bug, if bug there is, without the input data. What structure are you using this on? Does it happen with other structures? gilleain > Hi Gilleain, > > I tried pasting in the code at the first link, followed by > ss my_object > where my_object is the name of an object in the file, > and the output looks like this: > 1-1 > 1--1 S > 1-2 > 2--1 S > 2-3 > 3--1 S > 3-4 > ...etc. > > Am I using ss incorrectly? > > For the second link above, I do not know what command(s) to issue after I > paste in the code. > > Thanks for your help, > Frieda > > > > /////////////////////////////////////////// > > > > > Frieda Reichsman > > Molecules in Motion > > Interactive Molecular Structures > > http://www.moleculesinmotion.com > > > > > /////////////////////////////////////////// > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > >
