Hi Gillean, For what it's worth, I experienced the same... No dashes in the numbers:
1-1 1--1 L 1-2 2--1 L 2-3 3--1 L ... etc. The double dash must come from the "-1" value used as default for your SSE class. Better double check what's going on there :) Cheers, Tsjerk On 10/9/07, gilleain torrance <gilleain.torra...@gmail.com> wrote: > > Hi Frieda, > > That's odd. It seems to work okay for mulitchain proteins (I'll add > some extra bits to handle chains). > > The "--" in the output is weird. It suggests that either the start > numbers end in a dash or the end number start with a dash. It's > difficult to diagnose the bug, if bug there is, without the input > data. > > What structure are you using this on? Does it happen with other > structures? > > gilleain > > > Hi Gilleain, > > > > I tried pasting in the code at the first link, followed by > > ss my_object > > where my_object is the name of an object in the file, > > and the output looks like this: > > 1-1 > > 1--1 S > > 1-2 > > 2--1 S > > 2-3 > > 3--1 S > > 3-4 > > ...etc. > > > > Am I using ss incorrectly? > > > > For the second link above, I do not know what command(s) to issue after > I > > paste in the code. > > > > Thanks for your help, > > Frieda > > > > > > > > /////////////////////////////////////////// > > > > > > > > > > Frieda Reichsman > > > > Molecules in Motion > > > > Interactive Molecular Structures > > > > http://www.moleculesinmotion.com > > > > > > > > > > /////////////////////////////////////////// > > > > > > > ------------------------------------------------------------------------- > > This SF.net email is sponsored by: Splunk Inc. > > Still grepping through log files to find problems? Stop. > > Now Search log events and configuration files using AJAX and a browser. > > Download your FREE copy of Splunk now >> http://get.splunk.com/ > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
