I started a pymolwiki page for this at http://www.pymolwiki.org/index.php/Connect_mode so I had something to benchmark. If someone knows what connect_mode=3 does, please fill it in. The code in layer2/ObjectMolecule2.c is probably where to start if you want to take a stab at figuring it out.
-David On Thu, Apr 22, 2010 at 2:43 PM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi David, > > Check out the "connect_mode" setting: > > set connect_mode, 1 > > # no bonds > > fetch 1cll > > Cheers, > > -- Jason > > On Thu, Apr 22, 2010 at 2:14 PM, David Hall <li...@cowsandmilk.net> wrote: >> Is it possible to load a pdb file and have pymol skip making bonds? >> There's a bunch of undocumented options to load, but I don't think any >> of them do what I want. I have a file where there's a bunch of >> jumbled atoms and there's no relation between them, just thousands in >> the same place and pymol spends a long time loading it presumably >> trying to make these bonds. >> >> -David >> >> ------------------------------------------------------------------------------ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
