(s/benchmark/bookmark/) On Thu, Apr 22, 2010 at 4:12 PM, David Hall <li...@cowsandmilk.net> wrote: > I started a pymolwiki page for this at > http://www.pymolwiki.org/index.php/Connect_mode so I had something to > benchmark. If someone knows what connect_mode=3 does, please fill it > in. The code in layer2/ObjectMolecule2.c is probably where to start > if you want to take a stab at figuring it out. > > -David > > On Thu, Apr 22, 2010 at 2:43 PM, Jason Vertrees > <jason.vertr...@schrodinger.com> wrote: >> Hi David, >> >> Check out the "connect_mode" setting: >> >> set connect_mode, 1 >> >> # no bonds >> >> fetch 1cll >> >> Cheers, >> >> -- Jason >> >> On Thu, Apr 22, 2010 at 2:14 PM, David Hall <li...@cowsandmilk.net> wrote: >>> Is it possible to load a pdb file and have pymol skip making bonds? >>> There's a bunch of undocumented options to load, but I don't think any >>> of them do what I want. I have a file where there's a bunch of >>> jumbled atoms and there's no relation between them, just thousands in >>> the same place and pymol spends a long time loading it presumably >>> trying to make these bonds. >>> >>> -David >>> >>> ------------------------------------------------------------------------------ >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 >> >
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