use the PISA web service, you can upload a PDB file there and get detailed summary for all interfaces in your complex.
http://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver Cheers, Thomas On Tue, 2010-05-18 at 14:02 +0900, humayun scherrif wrote: > > > > > I have tried to using the method described > in http://muralab.org/~cmura/PyMOL/ , but I want to calculate the > Dimer Interface area as compared to total area of the Dimer > > > > > > > > On Tue, May 18, 2010 at 1:41 PM, Edward A. Berry <ber...@upstate.edu> > wrote: > humayun scherrif wrote: > Hello, > > I was wondering if anyone can tell me how to calculate > the Dimer > interface surface area ? Although I have seen related > posts, but nothing > work out well. > > > Then you need to say what you tried, and how it didn't work > out. > Otherwise you will get the same answers as in the previous > posts. > ed > > > > Thanks > > > -- > Best Regards, > > Humayun Sharif > > > -- > Best Regards, > > Humayun Sharif > Research Assistant > Protein Structure and Function Laboratory > Gwangju Institute Of Science & Technology, > Gwangju, 500-712, Republic of Korea > Tel (Res) :+82-62-718-4176 > Tel (Lab) : +82-62-970-2549 > Email: hum....@gmail.com -- Thomas Holder Group of Steffen Schmidt Department of Biochemistry MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
