Hi Eric, There's a script on the PyMOLWiki that accomplishes the selection part. You can then use get_area for the area calculation. Check out http://pymolwiki.org/index.php/InterfaceResidues.
Cheers, -- Jason On Tue, May 18, 2010 at 11:08 AM, Eric Larson <[email protected]> wrote: > Hello Humayun, > > You can use the pisa server at the EBI to find all kinds of information about > your dimer (and other assemblies that may be present) by simply uploading > your pdb file here: > > http://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver > > have a nice day, > Eric > __________________________ > Eric Larson, PhD > MSGPP Consortium > Department of Biochemistry > Box 357742 > University of Washington > Seattle, WA 98195 > >> Date: Tue, 18 May 2010 13:23:04 +0900 >> From: humayun scherrif <[email protected]> >> Subject: [PyMOL] Sruface area (Dimer interface) >> To: [email protected] >> Message-ID: >> <[email protected]> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hello, >> >> I was wondering if anyone can tell me how to calculate the Dimer interface >> surface area ? Although I have seen related posts, but nothing work out >> well. >> >> Thanks >> >> >> -- >> Best Regards, >> >> Humayun Sharif > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
