On Mon, Sep 13, 2010 at 12:30 AM, Jason Vertrees
<jason.vertr...@schrodinger.com> wrote:
> # get it's one-letter residue id
> print string.split(cmd.get_fastastr("mySelection"),'\n')[1]
> # get it's three-letter residue id
> print three_letter[string.split(cmd.get_fastastr("mySelection"),'\n')[1]]
>
> I just posted this on http://www.pymolwiki.org/index.php/Aa_codes.
> (You will need the two dictionaries found there.)a note regarding the "one_letter" dictionary. I always import the "to_one_letter_code" dictionary from biopython for that purpose, it has also three-letter shortcuts for many modified residues. from Bio.PDB import to_one_letter_code as one_letter Cheers, Thomas ------------------------------------------------------------------------------ Start uncovering the many advantages of virtual appliances and start using them to simplify application deployment and accelerate your shift to cloud computing http://p.sf.net/sfu/novell-sfdev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
