Hi Kanika, > alter_state 1, 1a8y_a, 1a8y,(x,y,z)=(-0.5*x + 0.886025*y, 0.886025*x + > 0.5*y, -z)
This doesn't work like that. It should probably be alter_state 1, 1a8y_a,(x,y,z)=(-0.5*x + 0.886025*y, 0.886025*x + 0.5*y, -z) > then i saved the molecule in pymol from file-->save molecule-->1a8y_a.pdb This worked for me as expected. > The problem is that when i open the file as text file the format is improper > since the space distribution is different from actual pdb files. > I am saying this because i have to use this file to convert in tleap format > and further use in a program. Is there any other way to save the molecule in > pymol? Can you give an example of where the spacing is wrong, e.g., post a section from the original file and the corresponding section from the new file? Cheers, Tsjerk -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ Fulfilling the Lean Software Promise Lean software platforms are now widely adopted and the benefits have been demonstrated beyond question. Learn why your peers are replacing JEE containers with lightweight application servers - and what you can gain from the move. http://p.sf.net/sfu/vmware-sfemails _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
