> There is also something like
> Batch: prepare_receptor4.py -r /cwd/receptor_1.pdb -o
> /cwd/receptor..pdbqt -A checkhydrogens
> sh: prepare_receptor4.py: not found
Dear Lina,
I also encountered this error when using the Autodock 4 plugin. I believe that
there is a bug in the script for adding hydrogens; my solution for some
structures was to use a different program to add hydrogens (I did this using
TRITON http://ncbr.chemi.muni.cz/triton/). Also, if I remember correctly, it is
best to ensure there are no underscores in your PDB filenames or selections.
I hope that is of some help,
Best,
Harry
-----------------------------------
Harry Jubb
Part II Biochemistry
Homerton College
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