Dear Thomas,
It works now after taking your advice.
Thanks very much.

Best Regards,
  Zhijian Xu

Thomas Holder wrote:
> On 06/16/2011 04:24 PM, zjxu wrote:
>> (3) In pymol/trunk/pymol:
>> python setup.py install --prefix=/BioSoft/pymol1.4.1_2011-6-16/
>> python setup2.py install
>> ./pymol
>> However, when I load a pdb, the warning comes again. "pymol -rkqc
>> script.py" complains again.
>
> have you set PYTHONPATH before running setup2.py and ./pymol?
>
> modules=/BioSoft/pymol1.4.1_2011-6-16/lib/python*/site-packages
> export PYTHONPATH=$modules:$PYTHONPATH
> python setup2.py install
> ./pymol
>
> If you have another (global) PyMOL installation which can be found by 
> python, the launcher will use that one! (this could be improved I guess).
>
> Cheers,
>   Thomas
>


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