Hi Mish, The correct commands for loading a DCD trajectory are:
load file.pdb, myTrajectory load_traj file.dcd, myTrajectory It's best to ensure that the object into which load and load_traj send their data is the same object. For large trajectories, make sure you set: set async_builds set defer_builds_mode, 3 before loading the large trajectory. If those commands fail check that your files are complete (sometimes frames/data can get cut off the trajectory resulting in lost data that PyMOL cannot load). Cheers, -- Jason On Sun, Jul 10, 2011 at 6:09 AM, mish <smn...@gmail.com> wrote: > Hi all: > I have been using pymol to load the dcd file before but > suddenly something went wrong (either in me or in software) and I can load > that traj anymore. I just want to be sure about the command, I am using to > load it. > First i load a pdb file molecule_abc.pdb > then I give command > load_traj molecule_abc, md1.cdc > Its neither loading trajectory nor producing some error or any > other message in command line than what I enter. > Could you please correct me ? > Sincerely > mish > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
