Hi Suhaila, It looks like it's trying to load the XPM file, in stead of the jpg/png. How did you invoke Pymol and what commands did you give?
Cheers, Tsjerk On Tue, Mar 13, 2012 at 1:49 PM, Suhaila Haji Mohd Hussin <bell_beaut...@hotmail.com> wrote: > Hello everyone especially to people who have used Contact Map Visualizer > plugin before. > > Please refer the link below for more details of the issue: > http://www.pymolwiki.org/index.php/Contact_map_visualizer > > In that link I managed to generate the contact map successfully and > converted the format from xpm to either jpg or png. > > When I loaded the contact map it was alright but after then as I loaded a > pdb file that generates the contact map it gives me the following error > instead of displaying the contact map which is shown in the link. > > Please help me what's this error all about? > > Error: 1 > <type 'exceptions.ValueError'> Exception in Tk callback > Function: <function <lambda> at 0xa180cdc> (type: <type 'function'>) > Args: () > Traceback (innermost last): > File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line > 1747, in __call__ > return apply(self.func, args) > File > "/usr/lib/pymodules/python2.7/pmg_tk/startup/contact_map_visualizer.py", > line 54, in <lambda> > self.menuBar.addmenuitem('Plugin', 'command','Contact Map Visualizer',label > = 'Contact Map Visualizer',command = lambda s=self : getImageLocation(s)) > File > "/usr/lib/pymodules/python2.7/pmg_tk/startup/contact_map_visualizer.py", > line 68, in getImageLocation > getPDBLocation(self) > File > "/usr/lib/pymodules/python2.7/pmg_tk/startup/contact_map_visualizer.py", > line 83, in getPDBLocation > loadImageOnScreen(self.file.name, self.pdbFile.name) > File > "/usr/lib/pymodules/python2.7/pmg_tk/startup/contact_map_visualizer.py", > line 118, in loadImageOnScreen > im = Image.open(image_file) > File "/usr/lib/python2.7/dist-packages/PIL/Image.py", line 1976, in open > return factory(fp, filename) > File "/usr/lib/python2.7/dist-packages/PIL/ImageFile.py", line 91, in > __init__ > self._open() > File "/usr/lib/python2.7/dist-packages/PIL/XpmImagePlugin.py", line 93, in > _open > raise ValueError, "cannot read this XPM file" > <type 'exceptions.ValueError'>: cannot read this XPM file > Many thanks, > Suhaila > > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
