Hi,
I am having trouble running APBS on a structure, and it appears to be
because some of the coordinates are -100 or more negative. This leads to APBS
reading numbers from adjacent columns as concatenated strings because there is
no space between the columns.
This is happening either if I use the plugin or run PDB2PQR and APBS as
stand-alone applications.
If I can adjust the co-ordinates such that the relative positions of
the atoms do not change but the coordinates stay greater than -100 I think that
the problem would be solved.
Has anyone ever encountered this problem, and is there a simple
solution in PyMol to adjust the coordinates and then save a simple PDB file
with the corrected values?
Thanks,
Warren Gallin
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