Hi Matt, There's currently no easy way to do this. Can you please send us some screenshots of what you'd like to see implemented?
Cheers, -- Jason On Tue, Oct 23, 2012 at 4:16 PM, Matthew Baumgartner <mp...@pitt.edu> wrote: > Hi, > Is it now possible to have wire mesh cgo object spheres in pymol? > I found this thread from a while ago (2004) but googleing, I didn't > find anything more recent. > > > The one sort of work around that I though of was to create pseudo-atoms > and somehow modify their radius and then show them as mesh. > But I would like to use CGO objects if possible. > > Does anyone have any suggestions? > > Thanks, > Matt Baumgartner > > > > Sphere transparency example included below... > > ALPHA must preceed COLOR to be effective. > > PyMOL does not yet do a global sort of tranparent triangles, so there will > be artifacts in OpenGL. Raytracing should look fine however. > > # from within a .py OR .pym file... > > from pymol.cgo import * > from pymol import cmd > > obj = [ > > ALPHA, 1.0, > COLOR, 1.0, 1.0, 1.0, > SPHERE, 0.0, 0.0, 0.0, 0.5, > > ALPHA, 0.66, > COLOR, 1.0, 0.0, 0.0, > SPHERE, 1.0, 0.0, 0.0, 0.5, > > ALPHA, 0.33, > COLOR, 0.0, 1.0, 0.0, > SPHERE, 0.0, 1.0, 0.0, 0.5, > > ALPHA, 0.11, > COLOR, 0.0, 0.0, 1.0, > SPHERE, 0.0, 0.0, 1.0, 0.5, > ] > > cmd.load_cgo(obj,'cgo01') > > Cheers,war...@delanoscientific.com > Warren > > -- > Warren L. DeLano, Ph.D. > Principal Scientist > > . DeLano Scientific LLC > . 400 Oyster Point Blvd., Suite 213 > . South San Francisco, CA 94080 > . Biz:(650)-872-0942 Tech:(650)-872-0834 > . Fax:(650)-872-0273 Cell:(650)-346-1154 > . mailto:war...@delsci.com > > >> -----Original Message----- >> From: pymol-users-ad...@lists.sourceforge.net >> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of >> Michael George Lerner >> Sent: Wednesday, November 17, 2004 9:43 AM >> To: pymol-users@lists.sourceforge.net >> Subject: [PyMOL] wire-mesh spheres? >> >> >> Hi, >> >> I want to draw a bunch of spheres of various sizes and >> colors. I'm currently using cgos for this. No problem. >> Now, I also want to draw wire-mesh spheres. Does anyone have >> a script for making these? While I'm at it, is there a way >> to make cgos transparent? >> >> Thanks, >> >> -Michael >> >> -- >> This isn't a democracy;| _ |Michael Lerner >> it's a cheer-ocracy. | ASCII ribbon campaign ( ) | Michigan >> -Torrence, Bring It On| - against HTML email X | Biophysics >> | / \ | mler...@umich >> >> >> ------------------------------------------------------- >> This SF.Net email is sponsored by: InterSystems CACHE FREE >> OODBMS DOWNLOAD - A multidimensional database that combines >> robust object and relational technologies, making it a >> perfect match for Java, C++,COM, XML, ODBC and JDBC. >> www.intersystems.com/match8 >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> > > > > ------------------------------------------------------------------------------ > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_sfd2d_oct > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
