Hi Jonny, I think it should be sufficient to have the atom names along the backbone correct (CA, N, C) and to have increasing residue numbering. If you like you can send me your file and I'll have a look.
Cheers, Thomas Johnny Pham wrote, On 11/15/12 09:41: > Hi, > > I was wondering if I have unnatural amino acids in beta sheet mimicking > peptides, is there a way to have them show up as a beta sheet in the > cartoon representation? I understand the code: > > alter 1-11/, ss='S' > > as an example of assigning residues 1-11 as a beta sheet but how do I > tackle artificial amino acids. Thanks! > > -Johnny -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. Get in-depth insight into apps, servers, databases, vmware, SAP, cloud infrastructure, etc. Download 30-day Free Trial. Pricing starts from $795 for 25 servers or applications! http://p.sf.net/sfu/zoho_dev2dev_nov _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
