I'll give it a try with the newer versions. I just checked, and I believe I'm doing some cleaning up.
Sure, I posted the scripte on this pastebin: http://pastebin.com/mC6Rs6wk Sorry for the layout (all pretty in development). In production, the script is invoked from the "frag" function. Martin On 20.12.12 17:05, Jason Vertrees wrote: > Martin, > > That sounds like a memory leak in v1.3. Can you try a newer version of > PyMOL and let us know if it still happens? We've fixed lots of bugs > since v1.3. > > Also, is your script simply iterating over structures and deleting > them when done? You sure you're not missing a cleanup step somewhere? > (Any chance we can see the script or a stub of it?) > > Cheers, > > -- Jason > > On Fri, Dec 21, 2012 at 3:17 AM, Martin Hediger <ma....@bluewin.ch> wrote: >> Hi Jason, >> I'm using PyMOL 1.3. >> >> Best regards >> Martin >> >> >> >> >> >> On 20.12.12 15:53, Jason Vertrees wrote: >>> Hi Martin, >>> >>> Which version of PyMOL are you using? >>> >>> Cheers, >>> >>> -- Jason >>> >>> On Fri, Dec 21, 2012 at 1:37 AM, Martin Hediger <ma....@bluewin.ch> wrote: >>>> Dear PyMOL users >>>> In a directory are PDB files of combined size equal to around 3MB. When >>>> I load all files into PyMOL, I observe that the required RAM of PyMOL >>>> (MacOS X 10.6) increases by roughly this amount. >>>> When I delete all objects, the RAM requirement remains the same and when >>>> I then reload all structures, the RAM requirement increases even further. >>>> I'm currently using PyMOL to batch process a number of files where a >>>> structure is loaded, modified and then deleted again from the objects >>>> list. This then results in RAM requirements of over 1GB and together >>>> with other applications, I run out of memory. >>>> Is there a way I can prevent PyMOL from behaving this way? >>>> >>>> Best regards and thanks for any help >>>> Martin >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial >>>> Remotely access PCs and mobile devices and provide instant support >>>> Improve your efficiency, and focus on delivering more value-add services >>>> Discover what IT Professionals Know. Rescue delivers >>>> http://p.sf.net/sfu/logmein_12329d2d >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >>> > > ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
