The way I did:
1] sudo pymol
PyMol -- > Plugin --> Manage Plugins --> install
install the pymol_dssp_stride.py
2] restart pymol
Plugin--> DSSP & Stride
On Saturday 23,March,2013 11:46 PM, James Starlight wrote:
> Dear PyMOl users!
>
> I've forced with the problem during installing of the DSSP/STRIDE plugin.
>
> In particular I've download pymol's plugins (and installed it via the
> plugin's meny) as well as DSSP binaries.
>
> then I've add DSSP_bin to the bash.rc
>
> so in the terminal I can launch it
>
> own@starlight ~/Documents/pymol $ dssp
> DSSP 2.0.4 options:
> -h [ --help ] Display help message
> -i [ --input ] arg Input file
> -o [ --output ] arg Output file, use 'stdout' to output to screen
> -v [ --verbose ] Verbose output
> --version Print version
> -d [ --debug ] arg Debug level (for even more verbose output)
>
>
> Examples:
>
> To calculate the secondary structure for the file 1crn.pdb and
> write the result to a file called 1crn.dssp, you type:
>
> dssp.exe -i 1crn.pdb -o 1crn.dssp
>
> but I cant use it in the pymol window.
>
> When I've tried to launch pymol script manually
> e.g by run pymol_dssp_stride.py
>
> I've obtained alot of errors that dssp and stride have not been launched.
>
> If I tried to start pre-installed script by
> run dssp
>
> I've obtained
>
> PyMOL>run dssp
> Traceback (most recent call last):
> File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 338, in parse
> parsing.run_file(path,self.pymol_names,self.pymol_names)
> File "/usr/lib/python2.7/dist-packages/pymol/parsing.py", line 455,
> in run_file
> execfile(file,global_ns,local_ns)
> File "dssp", line 1
> SyntaxError: Non-ASCII character '\xb7' in file dssp on line 2, but no
> encoding declared; see http://www.python.org/peps/pep-0263.html for
> details
>
> How Should I fix it?
>
> Thanks for help
>
> James
>
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