Hi Lau,
If you install from command line, it will most likely install to
/usr/local/bin/. The problem is, your icons probably link to the app you
uninstalled. I would try to find the /usr/local/bin/pymol in your finder
window, then drag the binary to your desktop in you want an icon. If you really
want a fresh install I would delete all the pymol directories in your computer
with a find command like, and run a fresh install...
sudo cd / ; find . -name “*pymol*" -exec rm -rf {} \;
However, that will delete any files that have the word “pymol” in it. So if you
have some sessions you need that have those words in it do not run that
command.
--
Jordan R. Willis, Ph.D.
Research Associate @Schief Lab
The Scripps Research Institute
10550 N. Torrey Pines Rd.
IMM Building - Room 217C
La Jolla, CA 92037 USA
Phone: 1-858-784-1000 ext: 43377
On Jan 18, 2015, at 11:29 PM, Lau Sze Yi (SIgN)
<lau_sze...@immunol.a-star.edu.sg> wrote:
> Hi,
> Since my edu copy failed after I upgrade to yosemite. I have downloaded pymol
> on my iMac 10.10.1 following the fink for 10.10 instructions on scottslab web:
> http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Fink_for_10.10
> After setting up fink, I ran sudo apt-get install pymol-py27. I am still
> quite new to unix, and have a few questions that I need clarified:
> I did not uninstall my old copy of MacPyMOL. I assume there is no
> interference between different versions?
> Where exactly is the newly installed pymol stored?
> I did not notice this before, but I have two copies of MacPyMOL buried in one
> of the folders of my PHENIX versions 1.8.3-1479 and 1.9-1692 respectively. I
> wasn’t sure if the pymol was already present when I downloaded my phenix or
> these are the ones I installed. I can open pymol using command line but not
> double clicking the icons in my finder window. Both these versions were shown
> to be last opened corresponding to the time I used command line pymol on two
> separate time. I am confused now as to when I type pymol in my terminal,
> which MacPyMOL is supposed to be opened.
> I need to do source /sw/bin/init.sh before I can start pymol. Is init.sh same
> as starting up fink to do its job? Is there a direct way to open pymol.
> Appreciate your advice.
>
> Regards,
> Sze Yi
>
>
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New Year. New Location. New Benefits. New Data Center in Ashburn, VA.
GigeNET is offering a free month of service with a new server in Ashburn.
Choose from 2 high performing configs, both with 100TB of bandwidth.
Higher redundancy.Lower latency.Increased capacity.Completely compliant.
http://p.sf.net/sfu/gigenet
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