(2) assuming you didn't change it when installing fink, fink will install
pymol in the /sw/bin directory.
(4) this is fink setting environment variables such as PATH. You can add a
line to your .bashrc to source it so it will be sourced every time you open
a terminal.
On Mon, Jan 19, 2015 at 2:29 AM, Lau Sze Yi (SIgN) <
lau_sze...@immunol.a-star.edu.sg> wrote:
> Hi,
> Since my edu copy failed after I upgrade to yosemite. I have downloaded
> pymol on my iMac 10.10.1 following the fink for 10.10 instructions on
> scottslab web:
> http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Fink_for_10.10
> After setting up fink, I ran sudo apt-get install pymol-py27. I am still
> quite new to unix, and have a few questions that I need clarified:
>
> 1. I did not uninstall my old copy of MacPyMOL. I assume there is no
> interference between different versions?
> 2. Where exactly is the newly installed pymol stored?
> 3. I did not notice this before, but I have two copies of MacPyMOL
> buried in one of the folders of my PHENIX versions 1.8.3-1479 and 1.9-1692
> respectively. I wasn’t sure if the pymol was already present when I
> downloaded my phenix or these are the ones I installed. I can open pymol
> using command line but not double clicking the icons in my finder window.
> Both these versions were shown to be last opened corresponding to the time
> I used command line pymol on two separate time. I am confused now as
> to when I type pymol in my terminal, which MacPyMOL is supposed to be
> opened.
> 4. I need to do source /sw/bin/init.sh before I can start pymol. Is
> init.sh same as starting up fink to do its job? Is there a direct way to
> open pymol.
>
> Appreciate your advice.
>
> Regards,
> Sze Yi
>
>
>
>
> ------------------------------------------------------------------------------
> New Year. New Location. New Benefits. New Data Center in Ashburn, VA.
> GigeNET is offering a free month of service with a new server in Ashburn.
> Choose from 2 high performing configs, both with 100TB of bandwidth.
> Higher redundancy.Lower latency.Increased capacity.Completely compliant.
> http://p.sf.net/sfu/gigenet
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
------------------------------------------------------------------------------
New Year. New Location. New Benefits. New Data Center in Ashburn, VA.
GigeNET is offering a free month of service with a new server in Ashburn.
Choose from 2 high performing configs, both with 100TB of bandwidth.
Higher redundancy.Lower latency.Increased capacity.Completely compliant.
http://p.sf.net/sfu/gigenet
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
