I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
And should I expect to see my both protein structures colored in the PyMOL
interface?
Thank you!
2016-01-29 11:36 GMT-02:00 Guilherme Souza <gsouza...@gmail.com>:
> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
> And should I expect to see my both protein structures colored in the PyMOL
> interface?
>
> 2016-01-29 11:35 GMT-02:00 Guilherme Souza <gsouza...@gmail.com>:
>
>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>> And should I expect to see my both protein structures colored in the
>> PyMOL interface?
>>
>> Thank you!
>>
>> 2016-01-29 11:09 GMT-02:00 Schubert, Carsten [JRDUS] <
>> cschu...@its.jnj.com>:
>>
>>> Hi Guilherme,
>>>
>>>
>>>
>>> the script is not a plugin, so you cannot install it since it is missing
>>> some software infrastructure to work as a plugin. Simply put the script
>>> into the directory you are working in and run it via ‘run colorbyrmsd.py’ .
>>> This will add the command to the scripting interface and you can run the
>>> command like any other pymol command. See the wiki for the details in that
>>> regards.
>>>
>>>
>>>
>>> HTH
>>>
>>>
>>>
>>> Carsten
>>>
>>>
>>>
>>> *From:* Guilherme Souza [mailto:gsouza...@gmail.com]
>>> *Sent:* Friday, January 29, 2016 7:07 AM
>>> *To:* pymol-users@lists.sourceforge.net
>>> *Subject:* [PyMOL] ColorByRMSD script
>>>
>>>
>>>
>>> Hi.
>>>
>>>
>>>
>>> I'm a starter in PyMOL, and I'm trying to use this script, ColorByRMSD (
>>> http://www.pymolwiki.org/index.php/ColorByRMSD). However, I'm getting
>>> the following error message, when I initialize PyMOL after installing the
>>> plugin:
>>>
>>>
>>>
>>> Exception in plugin 'colorbyrmsd' -- Traceback follows...
>>>
>>> Traceback (most recent call last):
>>>
>>> File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pmg_tk\PMGApp.py",
>>> line 313, in initializePlugins
>>>
>>> __builtin__.__import__(mod_name)
>>>
>>> SyntaxError: future feature print_function is not defined
>>> (colorbyrmsd.py, line 10)
>>>
>>> Error: unable to initialize plugin 'colorbyrmsd'.
>>>
>>>
>>>
>>> I'm using Python 2.7, and I've already checked '__future__' module, and
>>> 'print_function' is there, so I don't know what could be causing this.
>>>
>>>
>>>
>>> I'd be glad if anyone could give me a help.
>>>
>>>
>>>
>>> Thank you.
>>>
>>
>>
>
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