Okay. I did it, and kind of got the same error:
PyMOL>run colorbyrmsd.py
Traceback (most recent call last):
File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line
338, in parse
parsing.run_file(path,self.pymol_names,self.pymol_names)
File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", line
455, in run_file
execfile(file,global_ns,local_ns)
SyntaxError: future feature print_function is not defined (colorbyrmsd.py,
line 10)
2016-01-29 11:41 GMT-02:00 Matthew Baumgartner <mp...@pitt.edu>:
> Hi,
> You run the command 'run colorbyrmsd.py' in the Pymol command line. That
> initializes the function in pymol. If everything goes well, you shouldn't
> see anything (no errors). Then to use the command, type just 'colorbyrmsd
> [args...]' into the command line.
>
> You can see the usage instructions in the wiki.
>
> HTH,
>
> Matt Baumgartner
>
>
> On 01/29/2016 08:36 AM, Guilherme Souza wrote:
>
> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
> And should I expect to see my both protein structures colored in the PyMOL
> interface?
>
> Thank you!
>
> 2016-01-29 11:36 GMT-02:00 Guilherme Souza <gsouza...@gmail.com>:
>
>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>> And should I expect to see my both protein structures colored in the
>> PyMOL interface?
>>
>> 2016-01-29 11:35 GMT-02:00 Guilherme Souza < <gsouza...@gmail.com>
>> gsouza...@gmail.com>:
>>
>>> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'?
>>> And should I expect to see my both protein structures colored in the
>>> PyMOL interface?
>>>
>>> Thank you!
>>>
>>> 2016-01-29 11:09 GMT-02:00 Schubert, Carsten [JRDUS] <
>>> cschu...@its.jnj.com>:
>>>
>>>> Hi Guilherme,
>>>>
>>>>
>>>>
>>>> the script is not a plugin, so you cannot install it since it is
>>>> missing some software infrastructure to work as a plugin. Simply put the
>>>> script into the directory you are working in and run it via ‘run
>>>> colorbyrmsd.py’ . This will add the command to the scripting interface and
>>>> you can run the command like any other pymol command. See the wiki for the
>>>> details in that regards.
>>>>
>>>>
>>>>
>>>> HTH
>>>>
>>>>
>>>>
>>>> Carsten
>>>>
>>>>
>>>>
>>>> *From:* Guilherme Souza [mailto: <gsouza...@gmail.com>
>>>> gsouza...@gmail.com]
>>>> *Sent:* Friday, January 29, 2016 7:07 AM
>>>> *To:* <pymol-users@lists.sourceforge.net>
>>>> pymol-users@lists.sourceforge.net
>>>> *Subject:* [PyMOL] ColorByRMSD script
>>>>
>>>>
>>>>
>>>> Hi.
>>>>
>>>>
>>>>
>>>> I'm a starter in PyMOL, and I'm trying to use this script, ColorByRMSD (
>>>> <http://www.pymolwiki.org/index.php/ColorByRMSD>
>>>> http://www.pymolwiki.org/index.php/ColorByRMSD). However, I'm getting
>>>> the following error message, when I initialize PyMOL after installing the
>>>> plugin:
>>>>
>>>>
>>>>
>>>> Exception in plugin 'colorbyrmsd' -- Traceback follows...
>>>>
>>>> Traceback (most recent call last):
>>>>
>>>> File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pmg_tk\PMGApp.py",
>>>> line 313, in initializePlugins
>>>>
>>>> __builtin__.__import__(mod_name)
>>>>
>>>> SyntaxError: future feature print_function is not defined
>>>> (colorbyrmsd.py, line 10)
>>>>
>>>> Error: unable to initialize plugin 'colorbyrmsd'.
>>>>
>>>>
>>>>
>>>> I'm using Python 2.7, and I've already checked '__future__' module, and
>>>> 'print_function' is there, so I don't know what could be causing this.
>>>>
>>>>
>>>>
>>>> I'd be glad if anyone could give me a help.
>>>>
>>>>
>>>>
>>>> Thank you.
>>>>
>>>
>>>
>>
>
>
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