Thanks. It works much better. I just wish I could find an alternative to MeshLab. The surfaces it generates in the u3d file are really poor.
Jim James Kress Ph.D., President The KressWorks® Foundation An IRS Approved 501 (c)(3) Charitable, Nonprofit Organization ENGINEERING THE CURE © (248) 605-8770 Learn More and Donate At: Website: http://www.kressworks.org Facebook: https://www.facebook.com/KressWorks.Foundation/ Twitter: @KressWorksFnd Confidentiality Notice | This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential or proprietary information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, immediately contact the sender by reply e-mail and destroy all copies of the original message. -----Original Message----- From: Thomas Holder [mailto:thomas.hol...@schrodinger.com] Sent: Thursday, March 31, 2016 10:55 AM To: jimkress...@kressworks.org Cc: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim, There is a beta version of Incentive PyMOL available for download from http://pymol.org/download/1811/ (version 1.8.1.1 BETA). Cheers, Thomas On 29 Mar 2016, at 23:30, James Kress <jimkress...@kressworks.org> wrote: > Does that mean it is in the pay version now? If yes, how do I get it, > through the normal download link? > > Jim > > James Kress Ph.D., President > The KressWorks® Foundation > An IRS Approved 501 (c)(3) Charitable, Nonprofit Organization > ENGINEERING THE CURE © > (248) 605-8770 > > Learn More and Donate At: > Website: http://www.kressworks.org > Facebook: https://www.facebook.com/KressWorks.Foundation/ > Twitter: @KressWorksFnd > > Confidentiality Notice | This e-mail message, including any > attachments, is for the sole use of the intended recipient(s) and may > contain confidential or proprietary information. Any unauthorized > review, use, disclosure or distribution is prohibited. If you are not > the intended recipient, immediately contact the sender by reply e-mail > and destroy all copies of the original message. > > -----Original Message----- > From: Thomas Holder [mailto:thomas.hol...@schrodinger.com] > Sent: Sunday, March 27, 2016 4:10 PM > To: pymol-users <pymol-users@lists.sourceforge.net> > Subject: Re: [PyMOL] The Wiki appears outdated or in error > > Hi Jared, > > Thanks a lot for the patch. Applied to SVN rev 4154. > > Cheers, > Thomas > > On 25 Mar 2016, at 20:03, Sampson, Jared M. > <jms2...@cumc.columbia.edu> > wrote: > >> Hi Jim - >> >> Here's a patch for Open Source PyMOL (rev4153) that adds the > "collada_background_box" setting (default=0). If you're using Open > Source PyMOL and are up to applying it and rebuilding, feel free to use it. > Otherwise, I already sent it to Thomas, so hopefully it will be > incorporated into SVN and Incentive PyMOL soon. >> >> Cheers, >> Jared >> >> -- >> Jared Sampson >> Columbia University >> >>> On Mar 24, 2016, at 2:26 PM, Sampson, Jared M. > <jms2...@cumc.columbia.edu> wrote: >>> >>> Hi Jim - >>> >>>> When I >>>> >>>> set geometry_export_mode, 1 >>>> >>>> in PyMOL, then save myfile.dae, then import into MeshLab, MeshLab hangs. >>> >>> I can confirm that this happens for me, too. I guess maybe Meshlab > requires the camera? >>> >>> As a workaround, you can go back to the previous version with > collada_geometry_mode=1 and simply delete the box. You can do this > within Meshlab by using the "Select Connected Components in a region" > tool to select a corner the box, then clicking the "Delete the current > set of selected faces and all the vertices surrounded by that faces" > button (see attached screenshot). Then, if you zoom in (the box is > 100x larger than the largest dimension of the scene), your scene will be there. >>> >>> I'm working on a patch right now to exclude the bounding background >>> box > from default COLLADA output and make it optional via a new > `collada_background_box` setting. >>> >>> Sorry for the confusion, hope this clears it up. >>> >>> Cheers, >>> Jared >>> >>> -- >>> Jared Sampson >>> Columbia University >>> >> >> > <collada_background_box.patch>----------------- -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Transform Data into Opportunity. Accelerate data analysis in your applications with Intel Data Analytics Acceleration Library. Click to learn more. http://pubads.g.doubleclick.net/gampad/clk?id=278785471&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
