Thomas, In reading PyMOL PSE files into Jmol I have recently run into the problem with some of these files (version 1.8.2.3). Jmol has no problem reading the standard Pickle format, but there seems to be an option in PyMOL to serialize binary data structures as BINSTRING or SHORT_BINSTRING format along with other standard strings. This sounds like a great idea; I have no doubt that this will lead to considerably smaller PSE files and also faster loading. However, I'm struggling with atom information deserialization.
Q: Is this the default format now for saving PyMOL PSE files? Q: Is there a way to turn that off? Q: In order to do this properly, how many versions of the atom info data structure do I need to be able to process? Bob -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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