It’s the same command but just change the “S” to an “H”. Or you can use a “L” if you want a loop (unstructured).
alter 3-10/, ss=‘H’ You also need to enter the command: rebuild, to redraw the structure on your screen. Use rebuild after you enter the alter command. > On Jun 4, 2019, at 10:37 PM, sunyeping via PyMOL-users > <pymol-users@lists.sourceforge.net> wrote: > > Dear pymol user, > > I wonder why sometimes the secondary structure of a protein can not be > displayed incorrect in pymol. I have a structure, some residues are predicted > to be sheet or 3-10 helix with DSSP, but they are displayed as loop. Only > typing "dss" command in pymol doesn't work. I know by using the "alter" > commad the secondary structures can be assigned. The following command: > > alter 61-63/, ss='S' > > can assign residue 61-63 as sheet. However, what is the command to assign > residues as 3-10 helix? > > Thank you in advance. > > Arthur > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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