Hi Jason -
This happens when there is an overlap with another atom's dots, for example
where there is an H-bond or vdW contact. One workaround would be to extract
that residue you're showing in dots into a new object, so it doesn't have
anything else in the object to interfere with it.
Hope that helps.
Cheers,
Jared
From: Jason Mosier <parksinj...@gmail.com>
Reply: Jason Mosier <parksinj...@gmail.com>
Date: April 8, 2020 at 3:07:37 PM
To: pymol-users@lists.sourceforge.net <pymol-users@lists.sourceforge.net>
Subject: [PyMOL] Holes in dots
Hi, I've been trying to figure out how to fix this and I just can't figure it
out. I'm trying to make a nice render with dots and everything looks fine
except for that the nitrogens and oxygens have these holes in them (see image:
https://i.imgur.com/5G644br.png)
I know I could probably make an isomesh and all that, but if there's an easier
way to fix this I'd rather do that.
Best,
Jason M.
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