Forwarding bounced message.
~Josh
> From: Arang Rhie <arr...@gmail.com>
> Date: August 20, 2012 3:59:06 AM GMT+01:00
> To: pytables-users@lists.sourceforge.net
> Subject: Runtime warning and import error after installation
>
> Hi,
>
> I'm new to PyTable, and now getting really frustrating with the installation
> process.
> 1. What is the HDF5 runtime?
> I've installed HDF5 following the instruction given by HDF5.
> What file is PyTable looking for? And how can I set the path to it?
> I've installed HDF5 under /usr/local/hdf5 and set the environment
> variable $HDF5_DIR on /usr/local/hdf5.
> But still setup.py is not recognizing it without the
> --hdf5=/usr/local/hdf5 option.
> Moreover, I don't understand the 'shared library' of HDF5. does that
> mean to install hdf5-1.8.9-linux-x86_64-shared.tar.gz from HDF5?
> I've untar the ~shared.tar.gz under /usr/local/hdf5-shared and set the
> $LD_LIBRARY_PATH as /usr/local/hdf5-shared.
> What else do I need to do in addition?
> 2. I've configured LZO with --enable-shared option, and followed the
> instruction (make, make check, make test, make install).
> I've completed without any error, and the shared libraries where set under
> /usr/local/lib.
> Do I need to explicitly set other variables for running setup.py?
>
>
>
> [root@gmi-student tables-2.4.0]# python setup.py install
> --hdf5=/usr/local/hdf5
> * Found numpy 1.6.2 package installed.
> * Found numexpr 2.0.1 package installed.
> * Found Cython 0.16 package installed.
> * Found HDF5 headers at ``/usr/local/hdf5/include``, library at
> ``/usr/local/hdf5/lib``.
> .. WARNING:: Could not find the HDF5 runtime.
> The HDF5 shared library was *not* found in the default library
> paths. In case of runtime problems, please remember to install it.
> * Found LZO 2 headers at ``/usr/local/include``, library at
> ``/usr/local/lib``.
> .. WARNING:: Could not find the LZO 2 runtime.
> The LZO 2 shared library was *not* found in the default library
> paths. In case of runtime problems, please remember to install it.
> * Skipping detection of LZO 1 since LZO 2 has already been found.
> * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``.
> running install
> running build
> running build_py
> running build_ext
> running build_scripts
> running install_lib
> running install_scripts
> changing mode of /usr/bin/ptdump to 755
> changing mode of /usr/bin/ptrepack to 755
> changing mode of /usr/bin/nctoh5 to 755
> running install_egg_info
> Removing /usr/lib64/python2.7/site-packages/tables-2.4.0-py2.7.egg-info
> Writing /usr/lib64/python2.7/site-packages/tables-2.4.0-py2.7.egg-info
> [root@gmi-student tables-2.4.0]# python
> Python 2.7 (r27:82500, Sep 16 2010, 18:02:00)
> [GCC 4.5.1 20100907 (Red Hat 4.5.1-3)] on linux2
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import tables
> Traceback (most recent call last):
> File "<stdin>", line 1, in <module>
> File "tables/__init__.py", line 30, in <module>
> from tables.utilsExtension import getPyTablesVersion, getHDF5Version
> ImportError: libhdf5.so.7: cannot open shared object file: No such file or
> directory
>
> Serena Rhie
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