Hi Serena Rhie,
Il giorno 20/ago/2012, alle ore 08:40, PyTables Org <pytab...@googlemail.com> ha scritto: > Forwarding bounced message. > ~Josh > >> From: Arang Rhie <arr...@gmail.com> >> Date: August 20, 2012 3:59:06 AM GMT+01:00 >> To: pytables-users@lists.sourceforge.net >> Subject: Runtime warning and import error after installation >> >> Hi, >> >> I'm new to PyTable, and now getting really frustrating with the installation >> process. >> 1. What is the HDF5 runtime? >> I've installed HDF5 following the instruction given by HDF5. >> What file is PyTable looking for? And how can I set the path to it? >> I've installed HDF5 under /usr/local/hdf5 and set the environment >> variable $HDF5_DIR on /usr/local/hdf5. this is very strange. Can you please check it again and, in case, file a new issue on [1] >> But still setup.py is not recognizing it without the >> --hdf5=/usr/local/hdf5 option. >> Moreover, I don't understand the 'shared library' of HDF5. does that >> mean to install hdf5-1.8.9-linux-x86_64-shared.tar.gz from HDF5? >> I've untar the ~shared.tar.gz under /usr/local/hdf5-shared and set the >> $LD_LIBRARY_PATH as /usr/local/hdf5-shared. If you maintained the layout of the official tar ball then probably you should set LD_LIBRARY_PATH to point to /usr/local/hdf5-shared/lib (please note the ending "/lib"). >> What else do I need to do in addition? >> 2. I've configured LZO with --enable-shared option, and followed the >> instruction (make, make check, make test, make install). >> I've completed without any error, and the shared libraries where set >> under /usr/local/lib. >> Do I need to explicitly set other variables for running setup.py? >> No, it should be OK. If the /usr/local/lib/liblzo2.so actually exists the setup script should not complain about a missing runtime. Can you please check and let us know. >> >> >> [root@gmi-student tables-2.4.0]# python setup.py install >> --hdf5=/usr/local/hdf5 >> * Found numpy 1.6.2 package installed. >> * Found numexpr 2.0.1 package installed. >> * Found Cython 0.16 package installed. >> * Found HDF5 headers at ``/usr/local/hdf5/include``, library at >> ``/usr/local/hdf5/lib``. >> .. WARNING:: Could not find the HDF5 runtime. >> The HDF5 shared library was *not* found in the default library >> paths. In case of runtime problems, please remember to install it. >> * Found LZO 2 headers at ``/usr/local/include``, library at >> ``/usr/local/lib``. >> .. WARNING:: Could not find the LZO 2 runtime. >> The LZO 2 shared library was *not* found in the default library >> paths. In case of runtime problems, please remember to install it. >> * Skipping detection of LZO 1 since LZO 2 has already been found. >> * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. >> running install >> running build >> running build_py >> running build_ext >> running build_scripts >> running install_lib >> running install_scripts >> changing mode of /usr/bin/ptdump to 755 >> changing mode of /usr/bin/ptrepack to 755 >> changing mode of /usr/bin/nctoh5 to 755 >> running install_egg_info >> Removing /usr/lib64/python2.7/site-packages/tables-2.4.0-py2.7.egg-info >> Writing /usr/lib64/python2.7/site-packages/tables-2.4.0-py2.7.egg-info >> [root@gmi-student tables-2.4.0]# python >> Python 2.7 (r27:82500, Sep 16 2010, 18:02:00) >> [GCC 4.5.1 20100907 (Red Hat 4.5.1-3)] on linux2 >> Type "help", "copyright", "credits" or "license" for more information. >> >>> import tables >> Traceback (most recent call last): >> File "<stdin>", line 1, in <module> >> File "tables/__init__.py", line 30, in <module> >> from tables.utilsExtension import getPyTablesVersion, getHDF5Version >> ImportError: libhdf5.so.7: cannot open shared object file: No such file or >> directory >> >> Serena Rhie best regards [1] https://github.com/PyTables/PyTables/issues -- Antonio Valentino ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
