Hi Jon and Anthony, I can confirm that this is a package error of PyTables in Anaconda CE 64 for Windows. We have filed a ticket in Anaconda for fixing this. Sorry for the inconveniences.
Francesc Alted On 2/15/13 4:56 PM, Anthony Scopatz wrote: > Hi Jon, > > Unfortunately, I have no way of testing this out. I will say that I > have had problems with HDF5 and Anaconda on windows before since they > only ship the static *.lib hdf5 libraries. So it may be the case that > the pandas -> pytables / hdf5 interface hasn't been properly linked. > Barring someone on this list who can test things out for you, you > might try grabbing the PyTables source from github and building it on > top of your install of Anaconda. Sorry... > > Be Well > Anthony > > > On Fri, Feb 15, 2013 at 3:29 AM, Jon Rowland <rowland....@gmail.com > <mailto:rowland....@gmail.com>> wrote: > > Hi - apologies if this is a duplicate, I had an error sending the > first time and wasn't sure if it made it through. > > I have an issue using pandas/HDFStore/pytables in the Anaconda CE > distribution on Windows 64-bit. > > After a little troubleshooting with the Anaconda/pandas lists, it's > been suggested that it might be a pytables issue (or at least some > kind of package mismatch causing pytables not to work). > > I have a clean install of Anaconda 1.3.1 64-bit CE edition on a > Windows 64-bit machine. > > Running the pytables self-test gives the following output: > > > -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= > PyTables version: 2.4.0 > HDF5 version: 1.8.9 > NumPy version: 1.6.2 > Numexpr version: 2.0.1 (not using Intel's VML/MKL) > Zlib version: 1.2.3 (in Python interpreter) > Blosc version: 1.1.3 (2010-11-16) > Cython version: 0.17.4 > Python version: 2.7.3 |AnacondaCE 1.3.1 (64-bit)| (default, Jan 7 > 2013, 09:47:12) [MSC v.1500 64 bit (AMD64)] > Byte-ordering: little > Detected cores: 4 > > -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= > > Then I get a *lot* of output to standard error - pages and pages of it > - that looks something like this: > > C:\Anaconda\lib\site-packages\tables\filters.py:253: FiltersWarning: > compression library ``bzip2`` is not available; using ``zlib`` instead > % (complib, default_complib), FiltersWarning ) > C:\Anaconda\lib\site-packages\tables\filters.py:253: FiltersWarning: > compression library ``lzo`` is not available; using ``zlib`` instead > % (complib, default_complib), FiltersWarning ) > HDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: > #000: ..\..\src\H5A.c line 241 in H5Acreate2(): not a type > major: Invalid arguments to routine > minor: Inappropriate type > HDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: > #000: ..\..\src\H5A.c line 920 in H5Awrite(): not an attribute > major: Invalid arguments to routine > minor: Inappropriate type > EHDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: > #000: ..\..\src\H5A.c line 241 in H5Acreate2(): not a type > major: Invalid arguments to routine > minor: Inappropriate type > > Is this something I'm doing wrong or is there something wrong with > the package? > > Any help would be appreciated. > > Thanks, > Jon > > > ------------------------------------------------------------------------------ > Free Next-Gen Firewall Hardware Offer > Buy your Sophos next-gen firewall before the end March 2013 > and get the hardware for free! Learn more. > http://p.sf.net/sfu/sophos-d2d-feb > _______________________________________________ > Pytables-users mailing list > Pytables-users@lists.sourceforge.net > <mailto:Pytables-users@lists.sourceforge.net> > https://lists.sourceforge.net/lists/listinfo/pytables-users > > > > > ------------------------------------------------------------------------------ > Free Next-Gen Firewall Hardware Offer > Buy your Sophos next-gen firewall before the end March 2013 > and get the hardware for free! Learn more. > http://p.sf.net/sfu/sophos-d2d-feb > > > _______________________________________________ > Pytables-users mailing list > Pytables-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pytables-users -- Francesc Alted ------------------------------------------------------------------------------ Free Next-Gen Firewall Hardware Offer Buy your Sophos next-gen firewall before the end March 2013 and get the hardware for free! Learn more. http://p.sf.net/sfu/sophos-d2d-feb _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
