Hi all. A quick advert for a PhD position, using Python, if I may, since
deadline is approaching. Anyone who would like to apply for a position
funded by DSTL, working in the centre for atmospheric science, testing
machine learning algorithms..read on. Thnx!

*Improved algorithmic methods for identification of biological airborne
particulate matter *
*Background: *Aerosol particles, or particulate matter suspended in the
atmosphere, are ubiquitous components of the earth system. Primary
biological aerosols (PBA) consist of fungal and plant spores, fragments of
plant or animal matter, and pollens. The emission and impact of biological
aerosols on the Earth system is highly complex and uncertain. They impact
many aspects of the environment via: ecosystem and crop damage; the
potential for significant negative human and animal health impacts:
spreading infectious disease; toxic and allergenic properties and have also
been shown to influence precipitation patterns. State of the art
instruments designed to detect the presence of PBA work on the principle
that PBA contain biofluorophores such as NAD(P)H, riboflavin, and
tryptophan which auto-fluoresce when excited with UV radiation. Once
exposed to this radiation, the instrument then records this fluorescent
response, over several wavelengths, as well as the particle shape and size.

*What is the problem? *How do we turn this spectral response into
classification of PBA types? Unfortunately, there is a technological
bottleneck that limits our ability to accurately identify specific PBA
types generally and in real-time. Typical approaches revolve around the use
of 'traditional' unsupervised cluster and neural network analysis methods
applied to entire data sets.  However, a range of questions
remain unanswered. For example, how might we develop appropriate
technologies to be able to identify a specific bacterial species in
real-time and thus develop appropriate mitigation or response strategies.
This is the crux of this Phd studentship funded by the Defence Science and
Technology Laboratory (DSTL). Whilst traditional unsupervised methods give
us some insights into the potential range of disparate sources in the
atmosphere,  a range of supervised methods as trained to laboratory data of
known PBA types remain unvalidated. Addressing this challenge will not only
benefit the immediate issue of atmospheric PBA but have useful application
for a wide range of other atmospheric constituents.
*What will you do during this Phd:* In this project you will evaluate new
supervised learning algorithms for real-time discrimination of bio-aerosol
types in order to assess future PBA sensor networks, improve emission
parameterisations and provide forecast validation. This project will use
new laboratory and field databases based on technological advances in
real-time bioaerosol detection hardware including on-the-fly bioaerosol
identification and collection within urban and agricultural aerosol
populations.  You will apply these tools to a wide range of datasets,
including developing dispersion simulations and scenarios. You will work
within a highly multidisciplinary team, including project partners in DSTL
and the Laboratoire des sciences du climat et l'environnement in Paris. The
multidisciplinary skills you will learn during this project are highly
attractive to employers, including the ability to perform data
analysis within the realm of big data.
*When will you start**?** The project has to start before December 31st
2015.*


If interested, please get in touch with Dr David Topping for more
information:
<https://outlook.manchester.ac.uk/owa/redir.aspx?SURL=pM2j24B1N2epjLAjG1LuFcBWVHR-mJpnup6hl0x5NBdBKIqoWd7SCG0AYQBpAGwAdABvADoAZABhAHYAaQBkAC4AdABvAHAAcABpAG4AZwBAAG0AYQBuAGMAaABlAHMAdABlAHIALgBhAGMALgB1AGsA&URL=mailto%3adavid.topping%40manchester.ac.uk>
[email protected]
<https://outlook.manchester.ac.uk/owa/redir.aspx?SURL=pM2j24B1N2epjLAjG1LuFcBWVHR-mJpnup6hl0x5NBdBKIqoWd7SCG0AYQBpAGwAdABvADoAZABhAHYAaQBkAC4AdABvAHAAcABpAG4AZwBAAG0AYQBuAGMAaABlAHMAdABlAHIALgBhAGMALgB1AGsA&URL=mailto%3adavid.topping%40manchester.ac.uk>

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