Multichill added a comment.
I think I found what is going wrong. site.get_tokens(['csrf']) gets you a new
token, but doesn't update the internal token state:
>>> import pywikibot
>>> site = pywikibot.Site(u'commons', u'commons')
>>> print (site.tokens['csrf'])
1ade99bef6b895e188692438b12cbd9e5f4aacac+\
>>> site.get_tokens(['csrf'])
{'csrf': '113400e3b87ae1d1d53ec4ebee9bde105f4aacb8+\\'}
>>> print (site.tokens['csrf'])
1ade99bef6b895e188692438b12cbd9e5f4aacac+\
Looks like a site.tokens.load_tokens(['csrf']) does refresh the token, all
quite confusing.
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https://phabricator.wikimedia.org/T261050
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