Is it possible that someone who compromised QUBES, could re-write the AppVM in 
a way that whenever it is loaded up, it re-infects the entire system all over 
again...?

In that case, the only safe thing would be to manually back up the files within 
the AppVM with some sort of Fedora backup tool.

Or is that not an issue... and it's safe to just back up the entire AppVM using 
the QUBES tool...?

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