ml-it-r-de...@epigenomics.com wrote: > Hi, > > since a couple of days ago I see failures when using > R CMD INSTALL -l lib path-to-src/pkg.tar.gz > > This occurs in automated library updating via a shell script and is caused by > the > immediate preceding call to leave an 00LOCK folder > even though the package installation of that call succeeded. > This occurs at random (no obvious/systematic correlation to package name or > or such) and > only for packages where an earlier version has been installed into the same > library location. > > e.g. > > ~/R/hardy$ R-2.9.0/bin/R CMD INSTALL -l R-2.9.x-libs > R-2.9.x-libsSrc/CRAN/feature_1.2.3.tar.gz > > ... > ** building package indices ... > * DONE (feature) > > but > ~/R/hardy$ ls -al R-2.9.x-libs/00LOCK/feature/ > total 0 > lrwxrwxrwx 1 XXX epiR 39 Mar 27 05:56 feature -> > /mnt/local/R/hardy/R-2.9.x-libs/feature/ > > ?INSTALL tells me of a workaround via --unsafe or --no-lock but I would > prefer to use the > default incantation. > Any insights what the cause could be? > > Regards, Matthias > > > R version 2.9.0 RC (2009-04-10 r48321) > on Ubuntu hardy >
Not (easily) reproducible for me on r48325 (which only differs from 48321 in the FAQ and package count in internet.Rout.save). So, cannot possibly fix for 2.9.0 tomorrow. Anything peculiar about your setup (e.g., networked drive) that might keep the unlink from happening? -- O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalga...@biostat.ku.dk) FAX: (+45) 35327907 ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
