Wonderful Dylan, exactly the type of answer I was hoping for! :) (p.s: I would still be glad to read more replies if anyone has anything of value to add)
Thanks, Tal ----------------Contact Details:------------------------------------------------------- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) ---------------------------------------------------------------------------------------------- On Fri, Jul 2, 2010 at 5:34 PM, Dylan Beaudette <dylan.beaude...@gmail.com>wrote: > Hi, > > The 'aqp' package originally used the subplot function to add images > to to a dendrogram plot. I have since changed to use base graphics > primitives, as the results tend to scale better. I avoided the use of > 'layout' because sometimes it is convenient to add further > embellishments that transcend panels in the figure. Have a look at > some of the code in this package, it is on R-Forge: > > http://aqp.r-forge.r-project.org/ > > Cheers, > Dylan > > On Fri, Jul 2, 2010 at 4:34 AM, Tal Galili <tal.gal...@gmail.com> wrote: > > Hello all, > > > > I would like to recreate the plot shown here (from a useR 2009 > > presentation): > > http://www.agrocampus-ouest.fr/math/useR-2009/abstracts/pdf/Hocking.pdf > > > > I downloaded the code for that image, and discovered that it relies on > > external web services, and also having PERL installed on the computer. > > > > I believe this could be done "locally" using the "seqLogo" > function/package > > (see http://www.bioconductor.org/packages/2.2/bioc/html/seqLogo.html), > > combined with the subplot function (from the "TeachingDemos" package). > > > > So my questions are: > > 1) Might there be other packages/functions that I are more fitting for > the > > task of recreating this plot ? > > 2) Can someone give some pointers on how the subplot function could be > used > > to create such an image ? (I am not sure how to create such a > > layout, especially when it needs to be dynamic to the number of cluster > > choosen) > > > > > > Thanks in advance for any help, > > Best, > > Tal > > > > > > > > > > > > > > > > ----------------Contact > > Details:------------------------------------------------------- > > Contact me: tal.gal...@gmail.com | 972-52-7275845 > > Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | > > www.r-statistics.com (English) > > > ---------------------------------------------------------------------------------------------- > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
