Dear Milton, you have 2 packages for modelling species distribution in R: grasper and Biomod (by Wilfried Thuiller), but they are all presence-absence models, so you must generate pseudoabsences for each species, following recommendations in papers (see Lobo 2007). On the other side, there are free gis tools to perform presence-only models (Biomapper, GARP, Openmodeller). Write me if you need if you want some advice.
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