The problem seems to be in the header paths: > gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R > -I/usr/local/include
Is R.h not in /usr/include/R? My guess is that you installed an R rpm and not the R-devel rpm. But if you installed from rpms, this is a Fedora support issue -- this community is not responsible for Fedora's re-packaging of R. On Wed, 23 Apr 2008, Adam Wilson wrote: > Greetings all, > > I'm trying to install the msm package and it is failing on compilation. The > problem seems to be the analyticp component? Any advice on how to get it to > work? > > error message is below. I'm running R version 2.6.2 (2008-02-08) > x86_64-redhat-linux-gnu on a dell precision 690 with Fedora Core 8. > > Thanks, > Adam > > >> install.packages("msm",lib="/usr/lib64/R/library") > trying URL 'http://cran.mirrors.hoobly.com/src/contrib/msm_0.8.tar.gz' > Content type 'application/x-tar' length 577213 bytes (563 Kb) > opened URL > ================================================== > downloaded 563 Kb > > * Installing *source* package 'msm' ... > ** libs > gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R > -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 > -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic > -c analyticp.c -o analyticp.o > In file included from analyticp.c:9: > msm.h:3:15: error: R.h: No such file or directory > msm.h:4:26: error: R_ext/Applic.h: No such file or directory > analyticp.c: In function 'AnalyticP': > analyticp.c:51: warning: implicit declaration of function 'Calloc' > analyticp.c:51: error: expected expression before 'double' > analyticp.c:51: warning: cast to pointer from integer of different size > analyticp.c:52: error: expected expression before 'double' > analyticp.c:52: warning: cast to pointer from integer of different size > analyticp.c:63: warning: implicit declaration of function 'error' > analyticp.c:91: warning: implicit declaration of function 'Free' > make: *** [analyticp.o] Error 1 > ERROR: compilation failed for package 'msm' > ** Removing '/usr/lib64/R/library/msm' > > The downloaded packages are in > /tmp/RtmpaoUZiC/downloaded_packages > Updating HTML index of packages in '.Library' > Warning messages: > 1: In install.packages("msm", lib = "/usr/lib64/R/library") : > installation of package 'msm' had non-zero exit status > 2: In tools:::unix.packages.html(.Library) : > cannot create HTML package index >> > > > > > > > -- > Adam Wilson > http://hydrodictyon.eeb.uconn.edu/people/wilson/ > Department of Ecology and Evolutionary Biology > BioPharm 223 > University of Connecticut > Tel: 860.486.4157 > [EMAIL PROTECTED] > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.