Dear,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in
advance.
> vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate")
> snpgdsVCF2GDS(vcf.fn,"test.gds")
Start snpgdsVCF2GDS ...
Extracting bi-allelic and polymorhpic SNPs.
Scanning ...
file: D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf
Error in scan.vcf.marker(fn, method) :
The file (D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf) has
different numbers of columns.
Best regrads
--
Dr. Ye SUN
Key Laboratory of Plant Resources Conservation and Sustainable Utilization
South China Botanical Garden, Chinese Academy of Sciences
Xingke Road 723,Tianhe District, Guangzhou 510650, PR China
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