Hello,
Why do you think it is a package error?
The error message says that "the file [...] has different numbers of
columns". Please check that file first.
Regards,
Pascal
Le 22/01/2013 16:05, sun...@scib.ac.cn a écrit :
Dear,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in
advance.
vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate")
snpgdsVCF2GDS(vcf.fn,"test.gds")
Start snpgdsVCF2GDS ...
Extracting bi-allelic and polymorhpic SNPs.
Scanning ...
file: D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf
Error in scan.vcf.marker(fn, method) :
The file (D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf) has
different numbers of columns.
Best regrads
--
Dr. Ye SUN
Key Laboratory of Plant Resources Conservation and Sustainable Utilization
South China Botanical Garden, Chinese Academy of Sciences
Xingke Road 723,Tianhe District, Guangzhou 510650, PR China
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.