Yes, setting the fig.path option will prevent rmarkdown from deleting
the figure files, and the more natural way to preserve these
intermediate files is to set the rmarkdown option keep_tex or keep_md
(depending on your output format) to yes, e.g.

---
output:
  pdf_document:
    keep_tex: yes
  html_document:
    keep_md: yes
---

Regards,
Yihui
--
Yihui Xie <xieyi...@gmail.com>
Web: http://yihui.name


On Wed, Oct 21, 2015 at 7:21 AM, Jeff Newmiller
<jdnew...@dcn.davis.ca.us> wrote:
> I think the default now is to not save them unless you set the fig.path chunk 
> option.
>
> http://kbroman.org/knitr_knutshell/pages/Rmarkdown.html
> ---------------------------------------------------------------------------
> Jeff Newmiller                        The     .....       .....  Go Live...
> DCN:<jdnew...@dcn.davis.ca.us>        Basics: ##.#.       ##.#.  Live Go...
>                                       Live:   OO#.. Dead: OO#..  Playing
> Research Engineer (Solar/Batteries            O.O#.       #.O#.  with
> /Software/Embedded Controllers)               .OO#.       .OO#.  rocks...1k
> ---------------------------------------------------------------------------
> Sent from my phone. Please excuse my brevity.
>
> On October 21, 2015 1:47:33 PM GMT+02:00, Bob O'Hara <rni....@gmail.com> 
> wrote:
>>The figures should be saved somewhere. e.g. if you have x.Rmd, you
>>should have a X_files/ folder with subfolders for the figures (e.g.
>>X-html or X-latex). At least that's what I have.
>>
>>Bob
>>
>>On 20 October 2015 at 18:18, Witold E Wolski <wewol...@gmail.com>
>>wrote:
>>> I am running r-markdown from r-studio and can't work out how to keep
>>> the figures.
>>> I mean I have a few figures in the document and would like to have
>>> them as separate pdf's too as I have been used to have them when
>>using
>>> Sweave.
>>>
>>>
>>>
>>> best regards
>>> Witold
>>>
>>>
>>> --
>>> Witold Eryk Wolski
>>>
>>> ______________________________________________
>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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