'Snakemake' (https://snakemake.readthedocs.io/en/stable/) was created to ease pipelines through different tools so it might be useful.
In all honesty I only know of Snakemake, so it might be the completely wrong horse. HTH Ulrik On Fri, 31 Mar 2017 at 06:01 Wensui Liu <liuwen...@gmail.com> wrote: > How about pyper? > > On Thu, Mar 30, 2017 at 10:42 PM Kankana Shukla <shukla.k...@gmail.com> > wrote: > > > Hello, > > > > I am running a deep neural network in Python. The input to the NN is the > > output from my R code. I am currently running the python script and > calling > > the R code using a subprocess call, but this does not allow me to > > recursively change (increment) parameters used in the R code that would > be > > the inputs to the python code. So in short, I would like to follow this > > automated process: > > > > 1. Parameters used in R code generate output > > 2. This output is input to Python code > > 3. If output of Python code > x, stop > > 4. Else, increment parameters used as input in R code (step 1) and > > repeat all steps > > > > I have searched for examples using R and Python together, and rpy2 seems > > like the way to go, but is there another (easier) way to do it? I would > > highly appreciate the help. > > > > Thanks in advance, > > > > Kankana > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
