Installation of pyper gives me error code 1. I used pip install on my ubuntu machine. How to install Pyper correctly?
Here is the debug log file: ------------------------------------------------------------ /usr/bin/pip run on Tue Apr 4 15:07:58 2017 Downloading/unpacking pyper Getting page https://pypi.python.org/simple/pyper/ URLs to search for versions for pyper: * https://pypi.python.org/simple/pyper/ YV Analyzing links from page https://pypi.python.org/simple/pyper/ Found link https://pypi.python.org/packages/0f/46/47a5ebf039d1982a5cf7ed4f53ef1dcfccf57358566da973732cfc2ac31d/PypeR-1.1.1.tar.gz#md5=8f1708b06e1cdd73d3f03b4342c7c948 (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/4f/c2/957c9eb9ced95cedd04e6330ac446485d6e48f2d198f21f30aba0fe637cc/PypeR-1.0.1.tar.gz#md5=fc05ad098ef370deb7fffee34497fa82 (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/56/fa/d6d58ace212c2dac27c08fe03c603eede4f1190a46d11917946db74bd1e8/PypeR-1.1.0.tar.gz#md5=6a186b5399d75f32f0eb29275c7e01b3 (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/6c/87/a19361e922311aa86697edcbd95f3af85c69240350836136c629b7b29b38/PypeR-1.0.2.tar.gz#md5=73dd5f4b5dac2bd0a29425853c8de125 (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/7e/4d/8167a3f7b3897b15ac5c2424886579cefa852705ac4c925dbdb8740f8838/PypeR-1.0.tar.gz#md5=eb05aa5ccee55e5175ea8f36e2d42591 (from https://pypi.python.org/simpl$ Found link https://pypi.python.org/packages/7f/44/4c063481bed01a9f18e34b823c796af7b8f59f458a8e67fd171263a96488/PypeR-1.0.3.tar.gz#md5=b8b9535e825d88dc6f15aff13c6e180c (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/e6/3e/4ed8b7c23333f7a1d3b18ecb37b09b4867fee95151a3a59c43c20376678e/PypeR-1.1.2.tar.gz#md5=d056a481a13d07300a5ffc6848b34d1e (from https://pypi.python.org/sim$ Found link https://pypi.python.org/packages/eb/5a/2991b67ad276c55234ffff04b77eeb9c30e01cbda9920c9da9b20d656dc2/PypeR-1.0.4.tar.gz#md5=40b0ccaa645c7b936cc25ce86527aba6 (from https://pypi.python.org/sim$ Using version 1.1.2 (newest of versions: 1.1.2, 1.1.1, 1.1.0, 1.0.4, 1.0.3, 1.0.2, 1.0.1, 1.0) Downloading PypeR-1.1.2.tar.gz Downloading from URL https://pypi.python.org/packages/e6/3e/4ed8b7c23333f7a1d3b18ecb37b09b4867fee95151a3a59c43c20376678e/PypeR-1.1.2.tar.gz#md5=d056a481a13d07300a5ffc6848b34d1e (from https://pypi.python$ Running setup.py (path:/tmp/pip_build_root/pyper/setup.py) egg_info for package pyper Traceback (most recent call last): File "<string>", line 17, in <module> File "/tmp/pip_build_root/pyper/setup.py", line 13, in <module> py_modules=['pyper'], # copy to site-packages File "/usr/lib/python2.7/distutils/core.py", line 111, in setup _setup_distribution = dist = klass(attrs) File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 320, in __init__ _Distribution.__init__(self, attrs) File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__ self.finalize_options() File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 386, in finalize_options ep.require(installer=self.fetch_build_egg) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2100, in require working_set.resolve(self.dist.requires(self.extras),env,installer))) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 620, in resolve dist = best[req.key] = env.best_match(req, ws, installer) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 858, in best_match return self.obtain(req, installer) # try and download/install File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 870, in obtain return installer(requirement) File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 416, in fetch_build_egg from setuptools.command.easy_install import easy_install File "/usr/local/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 51, in <module> from setuptools.archive_util import unpack_archive File "/usr/local/lib/python2.7/dist-packages/setuptools/archive_util.py", line 11, in <module> from pkg_resources import ensure_directory, ContextualZipFile ImportError: cannot import name ContextualZipFile Complete output from command python setup.py egg_info: Traceback (most recent call last): File "<string>", line 17, in <module> File "/tmp/pip_build_root/pyper/setup.py", line 13, in <module> py_modules=['pyper'], # copy to site-packages File "/usr/lib/python2.7/distutils/core.py", line 111, in setup _setup_distribution = dist = klass(attrs) File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 320, in __init__ _Distribution.__init__(self, attrs) File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__ self.finalize_options() File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 386, in finalize_options ep.require(installer=self.fetch_build_egg) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2100, in require working_set.resolve(self.dist.requires(self.extras),env,installer))) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 620, in resolve dist = best[req.key] = env.best_match(req, ws, installer) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 858, in best_match return self.obtain(req, installer) # try and download/install File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 870, in obtain return installer(requirement) File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py", line 416, in fetch_build_egg from setuptools.command.easy_install import easy_install File "/usr/local/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 51, in <module> from setuptools.archive_util import unpack_archive File "/usr/local/lib/python2.7/dist-packages/setuptools/archive_util.py", line 11, in <module> from pkg_resources import ensure_directory, ContextualZipFile ImportError: cannot import name ContextualZipFile ---------------------------------------- Cleaning up... Removing temporary dir /tmp/pip_build_root... Command python setup.py egg_info failed with error code 1 in /tmp/pip_build_root/pyper Exception information: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 122, in main status = self.run(options, args) File "/usr/lib/python2.7/dist-packages/pip/commands/install.py", line 278, in run requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle) File "/usr/lib/python2.7/dist-packages/pip/req.py", line 1230, in prepare_files req_to_install.run_egg_info() File "/usr/lib/python2.7/dist-packages/pip/req.py", line 326, in run_egg_info command_desc='python setup.py egg_info') File "/usr/lib/python2.7/dist-packages/pip/util.py", line 715, in call_subprocess % (command_desc, proc.returncode, cwd)) InstallationError: Command python setup.py egg_info failed with error code 1 in /tmp/pip_build_root/pyper ------------------------------------------- On Fri, Mar 31, 2017 at 1:35 PM, Wensui Liu <liuwen...@gmail.com> wrote: > In https://statcompute.wordpress.com/?s=rpy2, you can find examples of > rpy2. > > In https://statcompute.wordpress.com/?s=pyper, you can find examples of > pyper. > > On Fri, Mar 31, 2017 at 11:38 AM, Kankana Shukla <shukla.k...@gmail.com> > wrote: > > I'm not great at rpy2. Are there any good examples I could see to learn > > how to do that? My R code is very long and complicated. > > > > On Fri, Mar 31, 2017 at 7:08 AM, Stefan Evert <stefa...@collocations.de> > > wrote: > > > >> > >> > On 30 Mar 2017, at 23:37, Kankana Shukla <shukla.k...@gmail.com> > wrote: > >> > > >> > I have searched for examples using R and Python together, and rpy2 > seems > >> > like the way to go, but is there another (easier) way to do it? > >> > >> Rpy2 would seem to be a very easy and convenient solution. What do you > >> need that can't easily be down with rpy2? > >> > >> Best regards, > >> Stefan > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
