This is because of the saved attribute "source" on z (that doesn't get printed out before evaluating z, because z is not yet then a function).

To complete your example:

> z <- substitute( function(){a+1}, list(a=quote(b)) )
> z
function() {
    b + 1
}
> eval(z)
function(){a+1}
> ze <- eval(z)
> attributes(ze)
$source
[1] "function(){a+1}"

> attr(ze, "source") <- NULL
> ze
function ()
{
    b + 1
}
>

I previously wrote on this topic:

Date: Fri, 24 Oct 2003 09:42:55 -0600
To: [EMAIL PROTECTED], Peter Dalgaard <[EMAIL PROTECTED]>
From: Tony Plate <[EMAIL PROTECTED]>
Subject: Re: [R] what's going on here with substitute() ?
Mime-Version: 1.0
Content-Type: text/plain; charset="us-ascii"; format=flowed

Peter, thank you for the explanation. This is indeed what is happening.

Might I suggest the following passage for inclusion in the help page for "function", and possibly also "body", in the DETAILS or WARNING section:

"Note that the text of the original function definition is saved as an attribute "source" on the function, and this is printed out when the function is printed. Hence, if the function body is changed in some way other than by assigning a value via body() (which removes the "source" attribute), the printed form of the function may not be the same as the actual function body."

Something along these lines could also go in the help for "eval", though if it were only there it might be very difficult to find if one were trying to look up puzzling behavior of a function.

Here is a transcript that shows what is happening, with another suggestion following it.

> eval(substitute(this.is.R <- function() X, list(X=!is.null(options("CRAN")[[1]]))))
> this.is.R
function() X
> body(this.is.R)
[1] TRUE
> attributes(this.is.R)
$source
[1] "function() X"
> attributes(this.is.R) <- NULL
> this.is.R
function ()
TRUE
> # the "source" attribute comes from function definition:
> attributes(function() X)
$source
[1] "function() X"
> # and seems to be added by "eval":
> attr(eval(parse(text="function() TRUE")[[1]]), "source")
[1] "function() TRUE"
>


> # we can assign bogus "source"
> attr(this.is.R, "source") <- "a totally bogus function body"
> this.is.R
a totally bogus function body
> # assigning to body() removes "source"
> body(this.is.R) <- list(666)
> this.is.R
function ()
666
> attr(this.is.R, "source")
NULL
>

An even better approach might be something that gave a warning on printing if the parsed "source" attribute was not identical to the language object being printed. This would probably belong in the code for "case LANGSXP:" in the function PrintValueRec in main/print.c (if it were written in R, I could contribute a patch, but right now I don't have time to try to understand the C there.) R code to do the test could be something like this:

> f <- this.is.R
> identical(f, eval(parse(text=attr(f, "source"))[[1]]))
[1] FALSE
> f <- function() TRUE
> identical(f, eval(parse(text=attr(f, "source"))[[1]]))
[1] TRUE
>

-- Tony Plate


At Wednesday 08:09 PM 3/17/2004, Gabor Grothendieck wrote:



I left out the brackets in my last email but the problem
(a reappears after have been substituted out) still remains:

> z <- substitute( function(){a+1}, list(a=quote(b)) )
> z
function() {
    b + 1
}
> eval(z)
function(){a+1}



---
Date:   Wed, 17 Mar 2004 20:10:43 -0500 (EST)
From:   Gabor Grothendieck <[EMAIL PROTECTED]>
[ Add to Address Book | Block Address | Report as Spam ]
To:   <[EMAIL PROTECTED]>
Subject:   [R] substitute question






Consider the following example:


# substitute a with b in the indicated function. Seems to work.
> z <- substitute( function()a+1, list(a=quote(b)) )
> z
function() b + 1

# z is an object of class call so use eval
# to turn it into an object of class expression; however,
# when z is evaluated, the variable a returns.
> eval(z)
function()a+1

Why did a suddenly reappear again after it had already been replaced?

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