Hi Pablo, "The magick package is required to crop" is related to using BiocStyle for your vignette. Not sure what causes it, but I reported this error some time ago: https://github.com/Bioconductor/BiocStyle/issues/77. On related issues and on bioc-devel mailing list (https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016656.html) it is mentioned to use knitr::opts_chunk$set(crop = NULL) to solve it. If the package is intended for CRAN I would recommend not using BiocStyle template, which would also solve this.
Best, Lluís On Thu, 5 Nov 2020 at 17:28, Pablo Fonseca <pfons...@uoguelph.ca> wrote: > > Dear Duncan Murdoch, > > Thank you for the quickly reply. Yes, the package is on Github. Any comment > or suggestion will be very welcome. > > https://github.com/pablobio/GALLO > > Kind regards. > > Pablo Augusto de Souza Fonseca, Ph.D. > Postdoctoral Fellow at University of Guelph > Centre for Genetic Improvement of Livestock > E pfons...@uoguelph.ca <mailto:pfons...@uoguelph.ca> > W http://animalbiosciences.uoguelph.ca/abscpeople/pfonseca > <http://animalbiosciences.uoguelph.ca/abscpeople/pfonseca> > ________________________________ > From: Duncan Murdoch <murdoch.dun...@gmail.com> > Sent: Thursday, November 5, 2020 11:22 AM > To: Pablo Fonseca <pfons...@uoguelph.ca>; r-package-devel@r-project.org > <r-package-devel@r-project.org> > Subject: Re: [R-pkg-devel] Error during automatic check for vignette > re-building - The magick package is required to crop > > CAUTION: This email originated from outside of the University of Guelph. Do > not click links or open attachments unless you recognize the sender and know > the content is safe. If in doubt, forward suspicious emails to > ith...@uoguelph.ca > > > On 05/11/2020 10:55 a.m., Pablo Fonseca wrote: > > Dear all, > > > > Currently I am trying to update my package (GALLO) with some small edits in > > the code. However, the package is not passing in the automatic check. I am > > getting only two warnings: > > > > The first one is a warning related with the maintainer email (my email in > > the case), which is correct. I really think that this is not the cause of > > the package failure during the automatic checking. > > The first one is actually about your version number: you called it > version 1.0, but CRAN already has 1.0. You need to increase the number. > > > > > > The second warning is a problem during the vignette rebuilding. The warning > > is "The magick package is required to crop". In my first submission I > > didn't experience this error. In the recent submissions for updates, I > > included the magick package as a dependency of the package. However, this > > didn't fixed the issue. Additionally, I can't reproduce the errors in my > > machines, even when running R CMD check --as-cran. The error seems to be > > related with the lines 465-495 from the vignette. I double checked the code > > and introduced some small changes (such as reducing the figure dimensions). > > I am not sure about this one; I'd need to look at the package to check. > Is it on Github? > > Duncan Murdoch > > > > > Have ever someone faced a similar issue? However, it seems ineffective. Is > > there any possibility to be a false negative? > > > > I am sending bellow the links for the check logs. > > > > package GALLO_1.0.tar.gz does not pass the incoming checks automatically, > > please see the following pre-tests: > > Windows: > > <https://win-builder.r-project.org/incoming_pretest/GALLO_1.0_20201105_154946/Windows/00check.log> > > Status: 2 WARNINGs > > Debian: > > <https://win-builder.r-project.org/incoming_pretest/GALLO_1.0_20201105_154946/Debian/00check.log> > > Status: 2 WARNINGs > > > > Last released version's CRAN status: ERROR: 1, WARN: 11 > > See: <https://CRAN.R-project.org/web/checks/check_results_GALLO.html> > > > > > > Kind regards. > > > > > > Pablo Augusto de Souza Fonseca, Ph.D. > > Postdoctoral Fellow at University of Guelph > > Centre for Genetic Improvement of Livestock > > E pfons...@uoguelph.ca <mailto:pfons...@uoguelph.ca> > > W http://animalbiosciences.uoguelph.ca/abscpeople/pfonseca > > <http://animalbiosciences.uoguelph.ca/abscpeople/pfonseca> > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-package-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
