Hello. It looks like things to have changed since;
$ R CMD check --as-cran wflo_1.6.tar.gz
* using log directory ‘/tmp/wflo.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘wflo/DESCRIPTION’ ... OK
* this is package ‘wflo’ version ‘1.6’
* package encoding: UTF-8
* checking CRAN incoming feasibility ...^[O WARNING
Maintainer: ‘Carsten Croonenbroeck <carsten.croonenbro...@uni-rostock.de>’
New submission
Package was archived on CRAN
Insufficient package version (submitted: 1.6, existing: 1.6)
CRAN repository db overrides:
X-CRAN-Comment: Archived on 2021-12-20 as requires archived package
'emstreeR'.
Uses the superseded packages: ‘doSNOW’, ‘snow’
Found the following (possibly) invalid URLs:
URL:
https://www.researchgate.net/publication/2560062_Real-Time_Fluid_Dynamics_for_Games
From: man/ShowWakePenalizers.Rd
Status: 403
Message: Forbidden
The Date field is over a month old.
This build time stamp is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wflo’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘rgdal’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘wflo-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Cost
> ### Title: Stub for a turbine's cost function.
> ### Aliases: Cost
> ### Keywords: Cost Profit
>
> ### ** Examples
>
> ## Returns a vector of two, c(100000, 100000).
> Cost(c(0.5, 0.7), c(0.2, 0.3))
[1] 1e+05 1e+05
>
> ## Replace the function by another function
> ## also called 'Cost', embedded in environment e.
> ## Also, see the vignette.
> ## No test:
> e$Cost <- function(x, y) #x, y \in R^n
+ {
+ retVal <- rep(e$FarmVars$UnitCost, min(length(x), length(y)))
+ retVal[x > 0.5] <- retVal[x > 0.5] * 2
+ return(retVal)
+ }
> set.seed(1357)
> Result <- pso::psoptim(par = runif(NumTurbines * 2), fn = Profit,
+ lower = rep(0, NumTurbines * 2), upper = rep(1, NumTurbines * 2))
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'par' in selecting a method for
function 'psoptim': object 'NumTurbines' not found
Calls: <Anonymous> -> runif -> .handleSimpleError -> h
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE
See
‘/tmp/wflo.Rcheck/00check.log’
for details.
So, you'll need to fix those in order for the package to reappear on CRAN.
My $.02
/Henrik
On Sat, Sep 24, 2022 at 12:15 PM Carsten Croonenbroeck
<carsten.croonenbro...@uni-rostock.de> wrote:
>
> Dear Lluís, dear Ben,
>
> sorry about being close to impolite before, as you clearly have sensed ("as
> polite a request as you can manage"... :-)). I have cooled down a little bit
> by now and am currently processing the package to be resubmitted, but
> honestly, if this turns out to be as painful as it has been the first time, I
> will likely drop it half way through.
>
> Best wishes, and thanks and sorry again
>
> Carsten
>
>
> -----Ursprüngliche Nachricht-----
> Von: R-package-devel [mailto:r-package-devel-boun...@r-project.org] Im
> Auftrag von Lluís Revilla
> Gesendet: Donnerstag, 22. September 2022 23:22
> Cc: r-package-devel@r-project.org
> Betreff: Re: [R-pkg-devel] Package ‘wflo’ was removed from the CRAN
> repository.
>
> Hi,
>
> I would still submit the package:
> First I agree with Ben that the note is worth fixing (and easily enough you
> just need to remove rgdal from your Description if it is not used.) Second,
> and more important, because perhaps in the 9 months since the last check
> changes in r-devel or quality checks might currently cause the package to
> fail the checks.
>
> The idea behind CRAN, and packages repositories like it (Bioconductor), is
> that packages in them should work together.
> Sometimes this makes it easier for developers to write more complex packages
> but dependencies have their own cost such as this situation.
> You can share your package via other methods but usually users install
> packages from repositories.
>
> Cheers,
>
> Lluís
>
>
> On Thu, 22 Sept 2022 at 22:25, Ben Bolker <bbol...@gmail.com> wrote:
>
> > * Automatic unarchiving *might* happen because someone on the CRAN
> > team happens to read this thread, but you will improve your odds
> > greatly by e-mailing c...@r-project.org with as polite a request as
> > you can manage ...
> >
> > * My guess is that nothing will happen until you resubmit (FWIW the
> > NOTE definitely seems like something CRAN would object to, so you
> > should fix it before resubmitting ...)
> >
> > good luck,
> > Ben Bolker
> >
> > On 9/22/22 4:15 PM, Carsten Croonenbroeck wrote:
> > > Hi Lluís,
> > >
> > > thanks for the clarification. And kudos to your detective flair. I’m
> > serious about that, as I would never have found out about this chain
> > of events.
> > >
> > > Well, there are no error or warnings to fix, so I think it would be
> > > best
> > if someone from the CRAN team could “unarchive” wflo since there is no
> > problem there and none of the events that were set in motion were due
> > to any of my doings. Actually, I don’t really agree to have to
> > resubmit, and my time for doing so is very limited. Maybe in the next few
> > weeks or so.
> > >
> > > Best
> > >
> > > Carsten
> > >
> > >
> > > Von: Lluís Revilla [mailto:lluis.revi...@gmail.com]
> > > Gesendet: Donnerstag, 22. September 2022 15:33
> > > An: Carsten Croonenbroeck
> > > Cc: r-package-devel@r-project.org
> > > Betreff: Re: [R-pkg-devel] Package ‘wflo’ was removed from the CRAN
> > repository.
> > >
> > > Hi Carsten,
> > >
> > > This seems to be an unfortunate chain of events between different
> > packages: RcppMLPACK -> emstreeR -> wflo
> > >
> > > Package RcppMLPACK was archived on 2021-12-20 as issues were not
> > corrected despite reminders.
> > > This resulted in the package emstreeR being archived on 2021-12-20
> > > as
> > requires archived package 'RcppMLPACK'.
> > > Which also resulted in your package, wflo, being archived.
> > > Later, emstreeR was unarchived on 2022-03-21 after a successful
> > submission improving the dependencies (probably removing the
> > dependency to RcppMLPACK).
> > > You can see the source of this info on
> > https://cran.r-project.org/src/contrib/PACKAGES.in
> > >
> > > About the emails, usually maintainers whose package depends on a
> > > package
> > that is about to be removed receive an email with a date by which they
> > should fix the problems.
> > > But, as I am not part of the CRAN team I cannot check it.
> > >
> > > I would recommend preparing a new submission with all the errors and
> > warnings fixed.
> > > Note that I think the package will be checked as a new package.
> > >
> > > Best,
> > >
> > > Lluís
> > >
> > >
> > >
> > >
> > >
> > > On Thu, 22 Sept 2022 at 13:17, Carsten Croonenbroeck <
> > carsten.croonenbro...@uni-rostock.de<mailto:
> > carsten.croonenbro...@uni-rostock.de>> wrote:
> > > Hi,
> > >
> > > I was really, really, really surprised to learn today that my
> > > package
> > “wflo” was removed from CRAN almost a year ago!
> > >
> > > Telling from the output at https://CRAN.R-project.org/package=wflo,
> > this is due to my package being “Archived on 2021-12-20 as requires
> > archived package 'emstreeR'.” However, emstreeR is in no way archived
> > (see https://CRAN.R-project.org/package=emstreeR). Clicking “check
> > results archive”, it says that there is only a note
> > >
> > > Result: NOTE
> > > Namespace in Imports field not imported from: ‘rgdal’
> > > All declared Imports should be used.
> > >
> > > which is indeed correct, I don’t use rgdal anymore. What now, remove
> > > the
> > rgdal import and resubmit? How come I wasn’t informed, my E-Mail is
> > running perfectly. Very puzzling…
> > >
> > > Best
> > >
> > > Carsten
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > ______________________________________________
> > > R-package-devel@r-project.org<mailto:R-package-devel@r-project.org>
> > mailing list
> > > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > ______________________________________________
> > > R-package-devel@r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >
> > --
> > Dr. Benjamin Bolker
> > Professor, Mathematics & Statistics and Biology, McMaster University
> > Director, School of Computational Science and Engineering Graduate
> > chair, Mathematics & Statistics
> >
> > ______________________________________________
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
> ______________________________________________
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