Ben, Thank you for the advice. I will submit a new minor revision after addressing the issue you pointed out.
Mark R. Mark Sharp 7526 Meadow Green St. San Antonio, TX 78251 mobile: 210-218-2868 [email protected] > On Jan 15, 2026, at 12:28 PM, Ben Bolker <[email protected]> wrote: > > I don't think that answers the OP's question (why was it archived > after apparently passing checks/being published)? > > I do get one error (reproduced below) when I `R CMD check --as-cran` > on Linux with r-devel. > > I would say that the path of least resistance would be: (1) fix the > error (assuming you can reproduce it ...); (2) bump the version number > to 1.0.9 (or 1.0.8.1, whatever); (3) (re)submit to CRAN. > > [24s/43s] ERROR > Running the tests in ‘tests/testthat.R’ failed. > Last 13 lines of output: > 'test_saveDataframesAsFiles.R:11:3', 'test_saveDataframesAsFiles.R:37:3', > 'test_saveDataframesAsFiles.R:62:3' > > ══ Failed tests > ════════════════════════════════════════════════════════════════ > ── Failure ('test_print.summary.nprcgenekeeprErr.R:29:3'): > print.summary.nprcgenekeeprErr prints expected output ── > Expected failure message to match regexp "produced output". > Actual message: > ✖ │ Expected `print(summary(qcStudbook(pedOne, reportErrors = > TRUE)))` to produce no output. > │ Actual output: > │ Error: The animal listed as a sire and also listed as a female > is: s1.\nError: The animal listed as a dam and also listed as a male > is: d1.\n\nPlease check and correct the pedigree file.\n \nAnimal > records where parent records are suspicous because of dates.\nOne or > more parents appear too young at time of birth.\n dam sire id sex > birth recordStatus exit sireBirth damBirth sireAge\n2 d2 s1 o2 > F 2009-03-17 original <NA> 2000-07-18 2015-09-16 8.66\n3 d2 > s2 o3 F 2012-04-11 original <NA> 2006-06-19 2015-09-16 > 5.81\n4 d2 s2 o4 M 2006-04-13 original <NA> 2006-06-19 > 2015-09-16 -0.18\n damAge\n2 -6.5\n3 -3.4\n4 -9.4 > > [ FAIL 1 | WARN 0 | SKIP 24 | PASS 861 ] > Error: > ! Test failures. > Execution halted > > On Thu, Jan 15, 2026 at 1:13 PM Henrik Bengtsson > <[email protected]> wrote: >> >> Sorry to hear. From https://cran.r-project.org/src/contrib/PACKAGES.in (*): >> >> "Package: nprcgenekeepr >> X-CRAN-Comment: Archived on 2025-07-29 as issues were not corrected in time. >> . >> Tested elapsed times. >> X-CRAN-History: Archived on 2022-11-03 as check problems were not corrected >> despite reminders. >> Unarchived on 2025-04-24." >> >> (*) That file is a hard-yo-remember "internal" URL. You can find it via >> https://www.cranhaven.org/. >> >> >> How this helps, >> >> Henrik >> >> On Thu, Jan 15, 2026, 09:52 R. Mark Sharp <[email protected]> wrote: >> >>> I submitted an update based on needing to make some changes due to >>> dependencies. As appended below, I received a message July 25, 2025 that >>> the updated package (1.0.8) was on its way to CRAN. I checked shortly after >>> July 25th and the package was published. However, it appears 1.0.8 was >>> removed on July 29th. I do not see a problem on >>> https://cran-archive.r-project.org/web/checks/2025/2025-07-29_check_results_nprcgenekeepr.html >>> >>> I have contacted [email protected] <mailto: >>> [email protected]> to find out what I need to do to rectify >>> this but have not gotten a response. Suggestions are welcome. >>> >>> Mark >>> R. Mark Sharp, Ph.D. >>> 7526 Meadow Green St. >>> San Antonio, TX 78251 >>> mobile: 210-218-2868 >>> [email protected] >>> >>> >>> >>> >>> Begin forwarded message: >>> >>> From: [email protected] >>> Subject: [CRAN-pretest-publish] CRAN Submission nprcgenekeepr 1.0.8 >>> Date: July 25, 2025 at 10:56:10 PM CDT >>> To: [email protected] >>> Cc: [email protected] >>> Reply-To: [email protected] >>> >>> Dear maintainer, >>> >>> thanks, package nprcgenekeepr_1.0.8.tar.gz is on its way to CRAN. >>> >>> Best regards, >>> CRAN teams' auto-check service >>> Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64 >>> Check: *, Result: OK >>> ______________________________________________ >>> [email protected] mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >>> >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> [email protected] mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
