Agree with Ben about just re-submitting. The CRAN results shared show 1.0.8 had landed on CRAN, and was passing tests: https://cran-archive.r-project.org/web/checks/2025/2025-07-29_check_results_nprcgenekeepr.html
The GitHub CRAN mirror also shows 1.08 being the one landed on July 25: https://github.com/cran/nprcgenekeepr/commits/master/ I also see from the CRAN e-mail that it was "on its way to CRAN" at 10 PM CDT, so it doesn't look like a timezone mismatch issue, either. Mike C On Thu, Jan 15, 2026 at 10:29 AM Ben Bolker <[email protected]> wrote: > I don't think that answers the OP's question (why was it archived > after apparently passing checks/being published)? > > I do get one error (reproduced below) when I `R CMD check --as-cran` > on Linux with r-devel. > > I would say that the path of least resistance would be: (1) fix the > error (assuming you can reproduce it ...); (2) bump the version number > to 1.0.9 (or 1.0.8.1, whatever); (3) (re)submit to CRAN. > > [24s/43s] ERROR > Running the tests in ‘tests/testthat.R’ failed. > Last 13 lines of output: > 'test_saveDataframesAsFiles.R:11:3', > 'test_saveDataframesAsFiles.R:37:3', > 'test_saveDataframesAsFiles.R:62:3' > > ══ Failed tests > ════════════════════════════════════════════════════════════════ > ── Failure ('test_print.summary.nprcgenekeeprErr.R:29:3'): > print.summary.nprcgenekeeprErr prints expected output ── > Expected failure message to match regexp "produced output". > Actual message: > ✖ │ Expected `print(summary(qcStudbook(pedOne, reportErrors = > TRUE)))` to produce no output. > │ Actual output: > │ Error: The animal listed as a sire and also listed as a female > is: s1.\nError: The animal listed as a dam and also listed as a male > is: d1.\n\nPlease check and correct the pedigree file.\n \nAnimal > records where parent records are suspicous because of dates.\nOne or > more parents appear too young at time of birth.\n dam sire id sex > birth recordStatus exit sireBirth damBirth sireAge\n2 d2 s1 o2 > F 2009-03-17 original <NA> 2000-07-18 2015-09-16 8.66\n3 d2 > s2 o3 F 2012-04-11 original <NA> 2006-06-19 2015-09-16 > 5.81\n4 d2 s2 o4 M 2006-04-13 original <NA> 2006-06-19 > 2015-09-16 -0.18\n damAge\n2 -6.5\n3 -3.4\n4 -9.4 > > [ FAIL 1 | WARN 0 | SKIP 24 | PASS 861 ] > Error: > ! Test failures. > Execution halted > > On Thu, Jan 15, 2026 at 1:13 PM Henrik Bengtsson > <[email protected]> wrote: > > > > Sorry to hear. From https://cran.r-project.org/src/contrib/PACKAGES.in > (*): > > > > "Package: nprcgenekeepr > > X-CRAN-Comment: Archived on 2025-07-29 as issues were not corrected in > time. > > . > > Tested elapsed times. > > X-CRAN-History: Archived on 2022-11-03 as check problems were not > corrected > > despite reminders. > > Unarchived on 2025-04-24." > > > > (*) That file is a hard-yo-remember "internal" URL. You can find it via > > https://www.cranhaven.org/. > > > > > > How this helps, > > > > Henrik > > > > On Thu, Jan 15, 2026, 09:52 R. Mark Sharp <[email protected]> wrote: > > > > > I submitted an update based on needing to make some changes due to > > > dependencies. As appended below, I received a message July 25, 2025 > that > > > the updated package (1.0.8) was on its way to CRAN. I checked shortly > after > > > July 25th and the package was published. However, it appears 1.0.8 was > > > removed on July 29th. I do not see a problem on > > > > https://cran-archive.r-project.org/web/checks/2025/2025-07-29_check_results_nprcgenekeepr.html > > > > > > I have contacted [email protected] <mailto: > > > [email protected]> to find out what I need to do to > rectify > > > this but have not gotten a response. Suggestions are welcome. > > > > > > Mark > > > R. Mark Sharp, Ph.D. > > > 7526 Meadow Green St. > > > San Antonio, TX 78251 > > > mobile: 210-218-2868 > > > [email protected] > > > > > > > > > > > > > > > Begin forwarded message: > > > > > > From: [email protected] > > > Subject: [CRAN-pretest-publish] CRAN Submission nprcgenekeepr 1.0.8 > > > Date: July 25, 2025 at 10:56:10 PM CDT > > > To: [email protected] > > > Cc: [email protected] > > > Reply-To: [email protected] > > > > > > Dear maintainer, > > > > > > thanks, package nprcgenekeepr_1.0.8.tar.gz is on its way to CRAN. > > > > > > Best regards, > > > CRAN teams' auto-check service > > > Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64 > > > Check: *, Result: OK > > > ______________________________________________ > > > [email protected] mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > [email protected] mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > ______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
