(follow-up) After managing to get around some strange ./configure errors, I managed to build JGR and it's java-dependencies (including rJava) from source, but I still run into trouble. The warning is the same, and so is the CPU consumption: li...@debian-liv:~$ JGR WARNING: org.rosuda.JRI.Mutex was unlocked by other thread than locked! This may soon lead to a crash...
Liviu On 8/4/09, Liviu Andronic <landronim...@gmail.com> wrote: > Dear all, > I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian > testing, and JGR is missbehaving. When JGR starts up, one core of the > CPU goes to 100% and stays there, even though I am keeping it idle and > not performing any operation. > > I tried JGR with both sun-java6-jdk and openjdk-6-jdk, > debian-liv:/home/liviu# update-alternatives --config java > There are 4 choices for the alternative java (providing /usr/bin/java). > > Selection Path Priority Status > ------------------------------------------------------------ > 0 /usr/lib/jvm/java-6-openjdk/jre/bin/java 1061 auto mode > 1 /usr/bin/gij-4.3 43 manual > mode > 2 /usr/lib/jvm/java-6-openjdk/jre/bin/java 1061 manual > mode > * 3 /usr/lib/jvm/java-6-sun/jre/bin/java 63 manual > mode > 4 /usr/lib/jvm/java-gcj/jre/bin/java 1043 manual > mode > > options 3 and 0, to no avail. After changing the java alternative, I > also executed > debian-liv:/home/liviu# R CMD javareconf > Java interpreter : /usr/bin/java > Java version : 1.6.0_14 > Java home path : /usr/lib/jvm/java-1.5.0-gcj-4.3-1.5.0.0/jre > Java compiler : /usr/bin/javac > Java headers gen.: /usr/bin/javah > Java archive tool: /usr/bin/jar > Java library path: /usr/lib/../lib/gcj-4.3-90:/usr/lib/jni > JNI linker flags : -L/usr/lib/../lib/gcj-4.3-90 -L/usr/lib/jni -ljvm > JNI cpp flags : > > Updating Java configuration in /etc/R > Done. > > Starting JGR via require(JGR) or the stand-alone script > (/usr/local/lib/R/site-library/JGR/scripts/run) makes no difference. > Neither running as user or as root. JGR will start and immediately > begin using 100% of one CPU core. > > One thing that it complains of is: > li...@debian-liv:~$ /usr/local/lib/R/site-library/JGR/scripts/run > WARNING: org.rosuda.JRI.Mutex was unlocked by other thread than > locked! This may soon lead to a crash... > > Could anyone suggest a way to work around this issue? Thank you, > Liviu > > [1] http://www.mail-archive.com/debian-scie...@lists.debian.org/msg03306.html > > > > > > > -- > Do you know how to read? > http://www.alienetworks.com/srtest.cfm > Do you know how to write? > http://garbl.home.comcast.net/~garbl/stylemanual/e.htm#e-mail > -- Do you know how to read? http://www.alienetworks.com/srtest.cfm Do you know how to write? http://garbl.home.comcast.net/~garbl/stylemanual/e.htm#e-mail _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
