Mick, you're using Homebrew's gfortran, so you're pretty much on your own, because that's not what CRAN R was compiled with so it won't work. Since Homebrew messes with /usr/local (unless you tell it not to and install is elsewhere - which is a actually a good idea) it may be easier to just completely move it aside and just install the CRAN complier from http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2
The other alternative is to use Homebrew entirely, including R, but then you have to install all packages from sources and/or through Homebrew. You can't mix CRAN and Homebrew because CRAN uses native libraries while Homebrew uses its own (incompatible) world. Cheers, Simon > On Mar 16, 2016, at 3:44 PM, Mick Jordan <mick.jor...@oracle.com> wrote: > > I'm trying to install a source package (therefore needing compilation) under > the R-3.2.4 Mac binary release. I happen to be using fortran 4.9.2 on this > machine and /Library/Frameworks/R.framework/Resources/etc/Makeconf is bound > to 4.8. I followed the instructions in R Installation and Administration to > change this with no success so far. FWIW it's the actuar package I am trying > to install. > > First the .R/Makevars-R_PLATFORM file had no effect as seen from the package > install log. Neither did setting R_MAKEVARS_USER. So I edited > /Library/Frameworks/R.framework/Resources/etc/Makeconf. It now looks right > but clang still cannot find lgfortran: > > clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup > -single_module -multiply_defined suppress > -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o actuar.so > beta.o burr.o chisq.o dpq.o dpqphtype.o exp.o gamma.o genbeta.o genpareto.o > hierarc.o init.o invburr.o invexp.o invgamma.o invgauss.o invparalogis.o > invpareto.o invtrgamma.o invweibull.o lgamma.o llogis.o lnorm.o names.o > normal.o panjer.o paralogis.o pareto.o pareto1.o phtype.o random.o > randomphtype.o trbeta.o trgamma.o unif.o util.o weibull.o > -L/Library/Frameworks/R.framework/Resources/lib -lRlapack > -L/Library/Frameworks/R.framework/Resources/lib -lRblas > -L/usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/gcc/x86_64-apple-darwin14.0.0/4.9.2 > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9 -lgfortran -lquadmath -lm > -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework > -Wl,CoreFoundation > ld: library not found for -lgfortran > clang: error: linker command failed with exit code 1 (use -v to see > invocation) > make: *** [actuar.so] Error 1 > ERROR: compilation failed for package ‘actuar’ > > bash-3.2$ sudo find /usr -name 'libgfortran*' > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/gcc/x86_64-apple-darwin14.0.0/4.9.2/i386/libgfortranbegin.a > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/gcc/x86_64-apple-darwin14.0.0/4.9.2/libgfortranbegin.a > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/i386/libgfortran.3.dylib > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/i386/libgfortran.a > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/i386/libgfortran.dylib > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/i386/libgfortran.spec > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/libgfortran.3.dylib > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/libgfortran.a > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/libgfortran.dylib > /usr/local/Cellar/gcc/4.9.2_1/lib/gcc/4.9/libgfortran.spec > /usr/local/gfortran/lib/gcc/x86_64-apple-darwin13/4.8.2/i386/libgfortranbegin.a > /usr/local/gfortran/lib/gcc/x86_64-apple-darwin13/4.8.2/i386/libgfortranbegin.la > /usr/local/gfortran/lib/gcc/x86_64-apple-darwin13/4.8.2/libgfortranbegin.a > /usr/local/gfortran/lib/gcc/x86_64-apple-darwin13/4.8.2/libgfortranbegin.la > /usr/local/gfortran/lib/i386/libgfortran.3.dylib > /usr/local/gfortran/lib/i386/libgfortran.a > /usr/local/gfortran/lib/i386/libgfortran.dylib > /usr/local/gfortran/lib/i386/libgfortran.la > /usr/local/gfortran/lib/i386/libgfortran.spec > /usr/local/gfortran/lib/libgfortran.3.dylib > /usr/local/gfortran/lib/libgfortran.a > /usr/local/gfortran/lib/libgfortran.dylib > /usr/local/gfortran/lib/libgfortran.la > /usr/local/gfortran/lib/libgfortran.spec > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
