You need to get the exact right version of graphviz before installing Rgraphviz. Around December I spent most of a day getting it to work. At that time the current stable version was 2.6 and the devel version was 2.7. I had to use the devel version, but then it worked "out of the box" so to speak.
/Kasper On Mar 17, 2006, at 12:30 AM, Julin Maloof wrote: > Hello, > > I know that graphviz has been covered a couple of times...I have > read those posts and am still having trouble. > > 1) I note that there is a binary of Rgraphviz now available. Is > that usable? And if so, where is it expecting graphviz to be > installed? when I try it with graphviz installed in either /usr > or /usr/local I get > >>> library(Rgraphviz) >> Loading required package: graph >> Loading required package: cluster >> Loading required package: Ruuid >> Error in dyn.load(x, as.logical(local), as.logical(now)) : >> unable to load shared library '/Library/Frameworks/R.framework/ >> Resources/library/Rgraphviz/libs/Rgraphviz.so': >> dlopen(/Library/Frameworks/R.framework/Resources/library/ >> Rgraphviz/libs/Rgraphviz.so, 6): Symbol not found: _agedgeattr >> Referenced from: /Library/Frameworks/R.framework/Resources/ >> library/Rgraphviz/libs/Rgraphviz.so >> Expected in: flat namespace >> Error: .onLoad failed in 'loadNamespace' for 'Rgraphviz' >> Error: package/namespace load failed for 'Rgraphviz' > > > > 2) I have also tried installing Rgraphviz from source. In that > case I get > >>> Sys.putenv(LD_LIBRARY_PATH="/usr/local/lib/graphviz") >> trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/ >> contrib/Rgraphviz_1.8.0.tar.gz' >> Content type 'application/x-gzip' length 1666191 bytes >> opened URL >> ================================================== >> downloaded 1627Kb >> >> * Installing *source* package 'Rgraphviz' ... >> checking for graphviz... >> The downloaded packages are in >> /private/tmp/RtmpK9aZCF/downloaded_packages >> checking for dotneato-config... not found >> checking for pkg-config... no >> failed >> configure: error: please specify a valid path to 'dotneato-config' >> version >= 1.12 or 'pkg-config' if you have graphviz >= 2.4 >> ./configure: line 1344: exit: using: numeric argument required >> ./configure: line 1344: exit: using: numeric argument required >> ERROR: configuration failed for package 'Rgraphviz' > > > The above make me wonder if I am not installing graphviz > correctly. I can't find 'dotneato-config' or 'pkg-config' anywhere > either. > > One of the previous posts makes reference to instructions on > Stefano's page or the R Developers page. Current R Developers > links take me to cran and no info on graphviz...does such a page > exist somewhere? > > Any advice on what to try next or where to look for more info? > > Thanks, > > Julin > >> version > _ > platform powerpc-apple-darwin7.9.0 > arch powerpc > os darwin7.9.0 > system powerpc, darwin7.9.0 > status > major 2 > minor 2.1 > year 2005 > month 12 > day 20 > svn rev 36812 > language R > > graphviz 2.8 > > > > > -- > Julin Maloof > Assistant Professor > Section of Plant Biology > University of California, Davis > 1 Shields Ave > Davis, CA, 95616 > > voice: (530) 752-8077 > fax: (530) 752-5410 > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
