Julin Maloof <[EMAIL PROTECTED]> writes: > 1) I note that there is a binary of Rgraphviz now available. Is > that usable? And if so, where is it expecting graphviz to be > installed? when I try it with graphviz installed in either /usr > or /usr/local I get
I think Simon is the one building the Rgraphviz binary so he might be able to shed some light on where it is expected to work (with which version of R and whether a graphviz lib is required or not). > 2) I have also tried installing Rgraphviz from source. In that case I get > >>> Sys.putenv(LD_LIBRARY_PATH="/usr/local/lib/graphviz") >> trying URL >> 'http://www.bioconductor.org/packages/bioc/stable/src/contrib/Rgraphviz_1.8.0.tar.gz' >> Content type 'application/x-gzip' length 1666191 bytes >> opened URL >> ================================================== >> downloaded 1627Kb >> >> * Installing *source* package 'Rgraphviz' ... >> checking for graphviz... >> The downloaded packages are in >> /private/tmp/RtmpK9aZCF/downloaded_packages >> checking for dotneato-config... not found >> checking for pkg-config... no If you installed a recent graphviz, then there is no dotneat-config script. Instead, for the autoconf tools to work, you need the pkg-config program installed and PKG_CONFIG_PATH set appropriately (/blah/lib/pkgconfig). But it should also work to pass the --with-graphviz configure option. Something like: R CMD INSTALL --configure-args='--with-graphviz=/blah/graphviz' \ Rgraphviz_x.y.z.tar.gz So I would try this first. If you still are having troubles, report back, but please include R version and how you installed, graphviz version and how/where installed, Rgraphviz version, height, weight... cheers, + seth >> failed >> configure: error: please specify a valid path to 'dotneato-config' version >> >= 1.12 or 'pkg-config' if you have graphviz >= 2.4 >> ./configure: line 1344: exit: using: numeric argument required >> ./configure: line 1344: exit: using: numeric argument required >> ERROR: configuration failed for package 'Rgraphviz' > > > The above make me wonder if I am not installing graphviz correctly. I can't > find 'dotneato-config' or 'pkg-config' anywhere either. > > One of the previous posts makes reference to instructions on Stefano's page > or the R Developers page. Current R Developers links take me to cran and no > info on graphviz...does such a page exist somewhere? > > Any advice on what to try next or where to look for more info? > > Thanks, > > Julin > >> version > _ > platform powerpc-apple-darwin7.9.0 > arch powerpc > os darwin7.9.0 > system powerpc, darwin7.9.0 > status > major 2 > minor 2.1 > year 2005 > month 12 > day 20 > svn rev 36812 > language R > > graphviz 2.8 > > > > > -- > Julin Maloof > Assistant Professor > Section of Plant Biology > University of California, Davis > 1 Shields Ave > Davis, CA, 95616 > > voice: (530) 752-8077 > fax: (530) 752-5410 > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
